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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATTTTGAAAAGCTATGTGGTGGCTGGATCAGACACTGCCAATCCAGAAAAATTTCTGGCGTACATGGTTCCTTCCTTGGATGAGgtagacatgcctctccataaactgatctctcttttacacaaattttgacaagtcaagaaaagttcagtttgattgatgtgttatcaatttatgttgctgtgccag

Basic information

species Arabidopsis thaliana
transcript AT1G79730.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164034694|gb|ES013302.1|ES013302
EST:     TGGTTCCTTCCTTGGATGAG                         TTGTCTAAGGATATCCATGATGAAAACGAAGAAATCTCTTACACTTGGGTT
genomic: TGGTTCCTTCCTTGGATGAGgtagacatgc ... gctgtgccagTTGTCTAAGGATATCCATGATGAAAACGAAGAAATCTCTTACACTTGGGTT
EST: gi|164017719|gb|ES190220.1|ES190220
EST:     TGGTTCCTTCCTTGGATTGAG                         TTGTCTAAGGATATCCATGATGAAAACGAAGAAATCTCTTACACTTGGGT
genomic: TGGTTCCTTCCTTGGA-TGAGgtagacatgc ... gctgtgccagTTGTCTAAGGATATCCATGATGAAAACGAAGAAATCTCTTACACTTGGGT
EST: gi|86058257|gb|DR354014.1|DR354014
EST:     TCCAGAAAAATTTCTGGCGTACATGGTTCCTTCCTTGGATGAG                         TTGTCTAAGGATATCCATGATGAAAACGAAGAAATCTCTTACACTTGGGTT
genomic: TCCAGAAAAATTTCTGGCGTACATGGTTCCTTCCTTGGATGAGgtagacatgc ... gctgtgccagTTGTCTAAGGATATCCATGATGAAAACGAAGAAATCTCTTACACTTGGGTT