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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGTTTGTTGTTGGAGTAAACGAGCACACATACCAACCAAACATGGATATAGTCTCCAATGCAAGTTGTACCACCAATTGTCTTGCCCCTCTTGCCAAGgttggtaatgttgcacaataattttaccctcatttcattgctatgagattcattaaggtcaactaaactgtatttggcag

Basic information

species Arabidopsis thaliana
transcript AT1G79530.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G79530.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os06g45590.1 (Oryza sativa), 5'ss of exon 8
TATGTTTGTTGTTGGAGTAAACGAGCACACATACCAACCAAACATGGATATAGTCTCCAATGCAAGTTGTACCACCAATTGTCTTGCCCCTCTTGCCAAGgt-tggtaatgttgcacaataattttaccctcatttcattgc-tatgagattcattaaggtcaactaaactg-tatttggcag---------------------------------------------------------------------------------
||||||||| || |||||||| ||| | |  ||| | || | |||| || | ||||| |||||||||||||| ||||| |||||||| || ||||||||||| |  |  ||||      ||   || |  |  |     | |  |||   |   ||  |   |  |  |  | |  ||| |                                                                                   
TATGTTTGTAGTCGGAGTAAATGAGAAGAATTACAACCCCAGCATGAATGTTGTCTCTAATGCAAGTTGTACTACCAACTGTCTTGCGCCCCTTGCCAAGgtatttttctgttctgttgtatcctttctttgttaaggatacacatggagtatgttgtgtctactttgatcggttcttgacttcagatgataagtacatttcgctgttacaaaatgtagcaccatgccaccatactggtttgtatcatggtttgtacttttcag

upper sequence: AT1G79530.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os02g07490.1 (Oryza sativa), 5'ss of exon 8
TATGTTTGTTGTTGGAGTAAACGAGCACACATACCAACCAAACATGGATATAGTCTCCAATGCAAGTTGTACCACCAATTGTCTTGCCCCTCTTGCCAAGgttggtaatgt-tgcacaataattttaccctcatttcattgctatga--------gattcattaaggtcaactaaactgtatttggcag------------------------------------
 |||||||| ||||||||||| ||| | |  ||  | || || ||| || | || || || ||||||||||| ||||| |||||||| ||||||||||||||   | || | |    |||  | ||||  |  |  ||||   || |         |||   |   || |  |    | | || | |                                      
AATGTTTGTCGTTGGAGTAAATGAGAAGAGCTATGATCCTAAAATGAATGTTGTTTCTAACGCAAGTTGTACTACCAACTGTCTTGCTCCTCTTGCCAAGgtaacttatctatttctaatcctgttactattttcccattttaatcataacaaacaatttgctcttgtgatttttcatattttcgtccatccaatggagctaattgatattccatgggtatgcag

upper sequence: AT1G79530.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA03G22790.1 (Glycine max), 5'ss of exon 8
TATGTTTGTTGTTGGAGTAAACGAGCACACATACCAACCAAACATGGATATAGTCTCCAATGCAAGTTGTACCACCAATTGTCTTGCCCCTCTTGCCAAGgttggtaatgttgcacaataattttaccctcatttcattgctatgagattcattaaggtcaactaaactgtatttggcag---------------------------
 |||||||| || ||||| || ||| | |||||| | ||||| ||||| || || || |||||||| ||||| || ||||||||||| ||||||||||||||| |     |||||  ||   ||   |||   || ||||   |||      |    ||  || | | ||| ||||   |                           
AATGTTTGTGGTAGGAGTGAATGAGAAGACATACAACCCAAAAATGGACATTGTTTCTAATGCAAGCTGTACAACGAATTGTCTTGCTCCTCTTGCCAAGgtttg----attgcatcatgtattg--cctagctttattgaactgaaggctttctctgt-gacgagaatgtttttgtttgtagtttaatggtataagacttaacttc

upper sequence: AT1G79530.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA16G09020.1 (Glycine max), 5'ss of exon 8
TATGTTTGTTGTTGGAGTAAACGAGCACACATACCAACCAAACATGGATATAGTCTCCAATGCAAGTTGTACCACCAATTGTCTTGCCCCTCTTGCCAAGgtt-ggtaatgttgcacaat----aattttacc---ctca----tttcattgctatgagattcattaaggtcaactaaactgta-tttggcag---------
 |||||||| || ||||| || ||| | |||||| | ||||| ||||| || || || |||||||| ||||| || ||||||||||| ||||||||||||||| | | | ||     | |    |  ||||     ||||    ||||  ||  |||||| |  |||| ||    |    |||| |||    |         
AATGTTTGTGGTAGGAGTGAATGAGAAGACATACAACCCAAAAATGGACATTGTTTCTAATGCAAGCTGTACAACGAATTGTCTTGCTCCTCTTGCCAAGgtttgattacgtcatgtattgctaagctttattgaactcaaggctttctctgtgatgagaatgtttaatgtt--tttgtttgtagtttaatggtataacact

upper sequence: AT1G79530.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv19s0085g00600.t01 (Vitis vinifera), 5'ss of exon 8
TATGTTTGTTGTTGGAGTAAACGAGCACACATACCAACCAAACATGGATATAGTCTCCAATGCAAGTTGTACCACCAATTGTCTTGCCCCTCTTGCCAAGgttggtaatgttgcacaataattttaccctcatttcattg-ctatgagattcattaaggtcaactaaactgtatttggcag-------------------
 |||||||| || |||||||| |||    ||||| | |||| |||| |||| || || |||||||| |||||||||||||| ||||| ||||||||||||||| |  |  ||    ||   | |      ||  | |||| |||    | |  || | |   |  ||    ||  |                        
GATGTTTGTGGTAGGAGTAAATGAGACTTCATACAAGCCAAGCATGAATATTGTTTCTAATGCAAGCTGTACCACCAATTGCCTTGCTCCTCTTGCCAAGgtttgatagcttattgaactttctgttttgcaaatgattggctacagtaattttttatgatgagaaatggttagctaatgcctgacttcatttatctatt