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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGGGCTCACAGAGACTTGTGCTGGTGGAACCTTCTCGGAGTTTGAGGACACATCCGTTGGCCGTGTTGGTGCTCCACTTCCTTGCTCCTTTGTAAAGgtaacctctttacctgatttgtccacttttaatactttgttagctatttattagtttgtatgtcgtagtctcttgtgatcatatgcttatatcttgtttcag

Basic information

species Arabidopsis thaliana
transcript AT1G77590.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G77590.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os12g07110.1 (Oryza sativa), 5'ss of exon 8
ATATGGGCTCACAGAGACTTGTGCTGGTGGAACCTTCTCGGAGTTTGAGGACACATCCGTTGGCCGTGTTGGTGCTCCACTTCCTTGCTCCTTTGTAAAGgtaacctctttacctgatttgtccac-ttttaatactttgttagctatttattagtttgtatgtcgtagtctcttgtgatcatatgcttatatcttgtttcag-
 ||||| || || ||||| |||||||| ||||| || || |||| ||| ||| |||| ||||| || |||||||||||||| ||||| || |   | |||||||  | | |   |   ||  |||  || ||||      | |  |  || || ||    |   |   ||   |||   || |     |    | | | | |  
GTATGGTCTTACTGAGACATGTGCTGGAGGAACATTTTCTGAGTATGATGACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACATTAAGgtaagttttgttttt--cttacccatattctaatttcagatgaattcgtttttggt--agaaaccactgtgagttgaagtcttgaagatcgtccatatatgaaa

upper sequence: AT1G77590.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G118286_T01 (Zea mays), 5'ss of exon 8
ATATGGGCTCACAGAGACTTGTGCTGGTGGAACCTTCTCGGAGTTTGAGGACACATCCGTTGGCCGTGTTGGTGCTCCACTTCCTTGCTCCTTTGTAAAGgtaacctctttacctgatttgtccacttttaatactttgttagctatttattagtttgtatgtcgtagtctcttgtgatcatatgcttatatcttgtttcag
 ||||| || || || ||||||||||| || || || || |||| ||| |||||||| || || ||||||||||||||||| ||||| || | | | ||||| | ||   |  || |  | |    | | ||  || | ||    |     |  | |||  |      | |  | |  |  ||||| || |   |||||   
TTATGGTCTGACTGAAACTTGTGCTGGAGGGACATTTTCAGAGTATGATGACACATCTGTCGGTCGTGTTGGTGCTCCACTACCTTGTTCGTATATTAAGgtcagcttcatttcttaactattttgtatcaaagctgtttttatcacgatgttatctgtgcggatctattttgtattttt-tatgccta-acaatgtttgta

upper sequence: AT1G77590.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA14G23710.1 (Glycine max), 5'ss of exon 7
ATATGGGCTCACAGAGACTTGTGCTGGTGGAACCTTCTCGGAGTTTGAGGACACATCCGTTGGCCGTGTTGGTGCTCCACTTCCTTGCTCCTTTGTAAAGgtaacctctttacctgatttgtccacttttaatactttgttagctatttattagtt-tgtatgtcgtagtctcttgtgatcatatgcttatatcttgtttcag
|||||| ||||||||||||||||||||||| || ||||| ||  |||| || ||||| ||||||||||||||  | || ||||| ||||| ||| | |||||||  | |  | |||||   |      || ||||    | |   | |  ||  || |||  |     |      |   | || || |   ||  |  ||   
ATATGGTCTCACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTTGGCCGTGTTGGACCACCTCTTCCGTGCTCATTTATTAAGgtaat-tatagatctgatcaattttaccttcatacaacttgaatgactcgttttttatgttggcttggggggagggaagttatgtggtagcatggtagttt--

upper sequence: AT1G77590.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA13G03280.1 (Glycine max), 5'ss of exon 7
ATATGGGCTCACAGAGACTTGTGCTGGTGGAACCTTCTCGGAGTTTGAGGACACATCCGTTGGCCGTGTTGGTGCTCCACTTCCTTGCTCCTTTGTAAAGgtaacctctttacctgatttgtccacttttaatactttgttagctatttattagtttgtatgtcgtagtctcttgtgatcatatgcttatatcttgtttcag
|||||| || |||||||||||||||||||| || ||||| ||  |||| || ||||| || |||||||||||  | || ||||| ||||| ||| | |||||||  | |  | |||||   |    | || ||||    | |   |   |||  ||   ||| | | |      |   | ||||| |   ||  |  ||   
ATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTCGGCCGTGTTGGACCACCTCTTCCATGCTCATTTATTAAGgtaat-tatagatctgatcaattttatcttcatacaacttgaatgacacattttttatgatggcttggggggagggagtaatatggtagcatggtagtttg-

upper sequence: AT1G77590.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA06G11860.1 (Glycine max), 5'ss of exon 7
ATATGGGCTCACAGAGACTTGTGCTGGTGGAACCTTCTCGGAGTTTGAGGACACATCCGTTGGCCGTGTTGGTGCTCCACTTCCTTGCTCCTTTGTAAAGgtaacctctttacctgatttgtccacttttaatactttgttagctatttattagtttgtatgtcgtagtctcttgtgatcatatgcttatatcttgtttcag
|||||| || ||||||||||||||||||||  | ||||| || ||||| || ||||| ||||| ||||||||  | ||  |||| ||||| | | | ||||||     || |   ||| |   |    |  |||| || ||| |      | |     ||| |  ||   |         | |||||  | | ||   ||||
ATATGGTCTAACAGAGACTTGTGCTGGTGGGTCATTCTCTGATTTTGACGATACATCTGTTGGACGTGTTGGGCCACCTGTTCCGTGCTCATATATTAAGgtagtaa-ttgattagatgtaatccacctccatacatt-ttaacc-----tcaaggaatatttactaacat---------aaatgctccttttttccctcag

upper sequence: AT1G77590.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv18s0001g02810.t01 (Vitis vinifera), 5'ss of exon 9
ATATGGGCTCACAGAGACTTGTGCTGGTGGAACCTTCTCGGAGTTTGAGGACACATCCGTTGGCCGTGTTGGTGCTCCACTTCCTTGCTCCTTTGTAAAGgtaacctctttacctgatttgtccactttta-atactttgttagctatttattagtttgtatgtcgtagtctcttgtgatcatatgcttatatcttgtttcag----
 ||||| || ||||||| |||||||||||| || || || |||| ||| || ||||| ||||| |||||||||||||||||||||||||| ||| | |||||||    |  |    | |  |  ||||  |  | ||||  |      |  |     |  ||||    |    |  |      |  |    | |||| |  |     
GTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTTCCTTGCTCATTTATTAAGgtaa---gtggatgaaaatattttacttgcatgtgctttaatgcgagatcttggacctacatgt----gcacttcctagctgaaaaccctgaccttggtagaaaaca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125318649|gb|EL332734.1|EL332734
EST:     CTTGCTCCTTTGTAAAG                         CTAGTAGACTGGGCGGAAGGTGGGTATCTAACTAGTGATAAGCCGATGCCC
genomic: CTTGCTCCTTTGTAAAGgtaacctctt ... cttgtttcagCTAGTAGACTGGGCGGAAGGTGGGTATCTAACTAGTGATAAGCCGATGCCC