1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGTACCTTGCATATAGTGATGGAATGAGAGTCATTGAGTCAGGGAAGATATCAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCGgtaaattttcagacaccttaaagatcaatctttgcagatcacatctttttactgtgaatttgagtgccataaacttttttgactttgtgcag
species | Arabidopsis thaliana |
transcript | AT1G75380.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCG ACCAAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAATATTTTGAGCAAEST: gi|125165497|gb|EL191755.1|EL191755
genomic: TCAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCGgtaaattttc ... ctttgtgcagACCAAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAATATTTTGAGCAA
EST: AGCTTCAGATGGTTTATTATTTACTGAACAAGACCG ACCAAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAATATTTTGAGCAAEST: gi|124812240|gb|EH897106.1|EH897106
genomic: AGCTTCAGATGGTTTATTATTTACTGAACAAGACCGgtaaattttc ... ctttgtgcagACCAAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAATATTTTGAGCAA
EST: CAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCG ACCAA-TGGTCAGGCTTGTCTTGATACEST: gi|125066515|gb|EL133361.1|EL133361
genomic: CAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCGgtaaattttc ... ctttgtgcagACCAAATGGTCAGGCTTGTCTTGATAC
EST: TCAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCG ACCAAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAAEST: gi|125212182|gb|EL227136.1|EL227136
genomic: TCAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCGgtaaattttc ... ctttgtgcagACCAAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAA
EST: TTTACTGAACAAGACCG ACCAAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAATATTTTGAGCAAEST: gi|125230407|gb|EL244492.1|EL244492
genomic: TTTACTGAACAAGACCGgtaaattttc ... ctttgtgcagACCAAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAATATTTTGAGCAA
EST: TCAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCG ACCAAATGGTCAGGEST: gi|125269711|gb|EL283796.1|EL283796
genomic: TCAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCGgtaaattttc ... ctttgtgcagACCAAATGGTCAGG
EST: TCAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCG ACCAAATGGTCAGGCTTGTCTTEST: gi|125296080|gb|EL310165.1|EL310165
genomic: TCAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCGgtaaattttc ... ctttgtgcagACCAAATGGTCAGGCTTGTCTT
EST: ATGGTTTATTATTTACTGAACAAGACCG ACCAAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAATATTTTGAGCAAEST: gi|125252480|gb|EL266565.1|EL266565
genomic: ATGGTTTATTATTTACTGAACAAGACCGgtaaattttc ... ctttgtgcagACCAAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAATATTTTGAGCAA
EST: TCAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCG ACCAAATGGTCAGGCTTGTCTTGATACGAAAGAGEST: gi|125306086|gb|EL320171.1|EL320171
genomic: TCAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCGgtaaattttc ... ctttgtgcagACCAAATGGTCAGGCTTGTCTTGATACGAAAGAG
EST: TCAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCG ACCAAATGGTCAGGEST: gi|164007745|gb|ES007563.1|ES007563
genomic: TCAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCGgtaaattttc ... ctttgtgcagACCAAATGGTCAGG
EST: TCAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCG ACCAAATGGTCAGGCTTGTCTTGATACGAAAGEST: gi|125040414|gb|EL112683.1|EL112683
genomic: TCAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCGgtaaattttc ... ctttgtgcagACCAAATGGTCAGGCTTGTCTTGATACGAAAG
EST: CAGCTTCAGATGGTTTATTATTTACTGAACAAGACCG ACCAAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAATAEST: gi|125019760|gb|EL092029.1|EL092029
genomic: CAGCTTCAGATGGTTTATTATTTACTGAACAAGACCGgtaaattttc ... ctttgtgcagACCAAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAATA
EST: TCAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCG ACCAAATGGTCAGGCTTGTACTTGATACGAAAGAGTTCAATATTTTGAG
genomic: TCAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCGgtaaattttc ... ctttgtgcagACCAAATGGTCAGGCTTGT-CTTGATACGAAAGAGTTCAATATTTTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTACCTTGCATATAGTGATGGAATGAGAGTCATTGAGTCAGGGAAGATATCAACACCGGCACCAGCTTCAGATGGTTTATTATTTACTGAACAAGACCGgtaaattttcagacaccttaaagatcaatctttgcagatcacatctttttactgtgaatttgagtgccataaacttttttgactttgtgcag
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