Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATTGCCGTGTACATTATTGATACCAGGTCTCTTTTTCATCCCCGAATCCCCTCGCTGGCTGgtaagccttacagtagtttgcttattcttcttgagtttagtgcatattttggttactccactcttttttttttttttaataacatcattaatcatctctgatgggatacttgatttcgttaaaatgtag

Basic information

species Arabidopsis thaliana
transcript AT1G75220.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G75220.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA14G08070.1 (Glycine max), 5'ss of exon 8
GGATATTGCCGTGTACATTATTGATACCAGGTCTCTTTTTCATCCCCGAATCCCCTCGCTGGCTGgtaagccttacagtagtttgcttattcttcttgagtttagtgcatatt-ttggttactccactcttttttttttttttaataacatcattaatcatctctgatgggatacttgatttcgttaaaatgtag
| || || || |||||| |||||||||| || || |||||||| ||||| |||||| | |||||||||||| ||     | |  |  |  |    |    |  | |   | || || ||| ||  |      ||| ||||  | |  | |                                             
GAATTTTACCCTGTACAATATTGATACCTGGCCTATTTTTCATTCCCGAGTCCCCTAGATGGCTGgtaagctttgtg--aatcagtattcttgagtgtgatcgaatatgtgttgttagtttctaaaagtgaatttgttttgctgaatatag--------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059936|gb|DR355693.1|DR355693
EST:     CATAATTGATACCAGGTCTCTTTTTCATCCCCGAATCCCCTCGCTGGCTG                         GCAAAAATGGGTATGACAGATGAATTTGAAACTTCATTACAAGTTCTTCGA
genomic: CATTATTGATACCAGGTCTCTTTTTCATCCCCGAATCCCCTCGCTGGCTGgtaagcctta ... taaaatgtagGCAAAAATGGGTATGACAGATGAATTTGAAACTTCATTACAAGTTCTTCGA