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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATAGGAACCAAGATACATGTGGCCTGCAAGACATTGGTGGTCATATAATGAAAATCCCCCTCATTGTATTTCAAGTGGTACTTTGCATGCATCTAGAGgtacacaacatttctatctatcatacatttcttgtgtatctagaggtcatttaccaaaatcgtgtggtttgaactttcag

Basic information

species Arabidopsis thaliana
transcript AT1G73950.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73950.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv17s0000g04160.t01 (Vitis vinifera), 5'ss of exon 8
CGATAGGAACCAAGATACA---TGTGGCCTGCAAGACATTGGTGGTCATATAATGAAAATCCCCCTCATTGTATTTCAAGTGGTACTTTGCATGCATCTAGAGgtacacaacatttctatct----atcatacatttcttgtgtat-----ctagaggtcattt----accaaaatcgt-gtggtttgaactttcag
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---TCAGCACCAGGATAGAATGTGTGGGCTGCAAGACATTGGTGGTCATATCATGAAAGTTCCATTAATTGGATTCCAAGTCCTTCTTTGTATGCGCTTAGAGgtacattttgtttttgggttgtgatcatggataccttttggataatttcttggggatgtcttatgaacagatttatagcggttttacatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125322933|gb|EL337015.1|EL337015
EST:     TTTCAAGTGGTACTTTGCATGCATCTAGAG                         GGGACTCCTGAAGCTGCTAAGTCTATATCTGTCCCTGTCCTGTTTTCTCCA
genomic: TTTCAAGTGGTACTTTGCATGCATCTAGAGgtacacaaca ... gaactttcagGGGACTCCTGAAGCTGCTAAGTCTATATCTGTCCCTGTCCTGTTTTCTCCA