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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGCTTGATCTAAACGTGGGGTTGCACGCAGAGAAAAAGATCAAAGGATTCGCCATTAGCGAAACTGCTTTCTTCATCTTCCTCCTTGTCGCCTCCAGgtttctaagctctaaatcaaattttgactacacttactaaaacaaaggcttttctaaactctaacttacttgctaaatttggttag

Basic information

species Arabidopsis thaliana
transcript AT1G73680.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73680.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv17s0000g02700.t01 (Vitis vinifera), 5'ss of exon 9
AGAAGCTTGATCTAAACGTGGGGTTGCACGCAGAGAAAAAGATCAAAGGATTCGCCATTAGCGAAACTGCTTTCTTCATCTTCCTCCTTGTCGCCTCCAGgt---ttctaag---ctctaaatcaaattttgactacacttactaaaacaaaggcttttctaaactctaacttacttgctaaatttggttag--------
||||||| || ||    || ||  | || |||||||| ||||||||||| ||||||||  |||| || |||||||||||||| |||||  | || || ||||   ||| | |   || ||  | |||  |    |  |   | |        || |||  |   ||| |  ||   || || || || |  |        
AGAAGCTCGACCTGCTAGTCGGCCTACATGCAGAGAAGAAGATCAAAGGCTTCGCCATCTGCGAGACCGCTTTCTTCATCTTTCTCCTCATTGCATCAAGgtatattcaatgaccctttagctgaaaaatgagatttaagcagttgcttct-ggttttcattttctccatgttctctg-tatatctgttatgatgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124832983|gb|EH917422.1|EH917422
EST:     AAACTGCTTTCTTCATCTTCCTCCTTGTCGCCTCCAG                         GAGGCTAGAAGCAGATAGGTTTTTCACTACGAACTTCAATGAGAAGACTTA
genomic: AAACTGCTTTCTTCATCTTCCTCCTTGTCGCCTCCAGgtttctaagc ... atttggttagGAGGCTAGAAGCAGATAGGTTTTTCACTACGAACTTCAATGAGAAGACTTA
EST: gi|125048607|gb|EL120876.1|EL120876
EST:     TTCGCCATTAGCGAAACTGCTTTCTTCATCTTCCTCCTTGTCGCCTCCAG                         GAGGCTAGAAGCAGATAGGTTTTTCA
genomic: TTCGCCATTAGCGAAACTGCTTTCTTCATCTTCCTCCTTGTCGCCTCCAGgtttctaagc ... atttggttagGAGGCTAGAAGCAGATAGGTTTTTCA