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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTTCAATGACGACTTGAATTTGAGGCAACCTGAAACTAAGGCAATTATGACTTGGCTGAGAGATATACGATTCACAGCGTCGGCTACTCTGCACGGGgtaattttcctgtagcagacttgtgcatactataacgtcttaagtatgtccaatttgaaagtttactttcaagattatgggagggggttttcaatgtaatgtcaaggaaaatcttgattcaatgtgaaaaaaatatttgctaaaccagcttttgttttag

Basic information

species Arabidopsis thaliana
transcript AT1G71696.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71696.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA20G31000.2 (Glycine max), 5'ss of exon 1
TCCTTTCAATGACGACTTGAATTTGAGGCAACCTGAAACTAAGGCAATTATGACTTGGCTGAGAGATATACGATTCACAGCGTCGGCTACTCTGCACGGGgtaattttcctgtagcagacttgtgcatactataacgtcttaagtatgtccaatttgaaagtttactttcaagat-tatgggagggggttttcaatgtaatgtcaaggaaaatcttgattcaatgtgaaaaaaatatttgctaaaccagcttttgttttag
|  ||| ||||| ||   | |||   ||||||||||||| |  ||||| |||| |||| |||||||||||||||||||||| || || ||| |||| |||||| |  | || | | |    |   |||| || |  |  |   |  ||    ||||      ||| |||   ||| | |     ||| |   |  | || |  ||                                                        
TTTTTTTAATGATGATGAGGATTCCCGGCAACCTGAAACAAGAGCAATAATGAATTGGTTGAGAGATATACGATTCACAGCATCTGCCACTTTGCATGGGgtattaattctttggaa----ttcacataataaattgctt---gcttgatttatttatttaattatttttgtgatgtctactctgggctgagctgtttatttccagt------------------------------------------------------

upper sequence: AT1G71696.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA10G36590.1 (Glycine max), 5'ss of exon 8
TCCTTTCAATGACGACTTGAATTTGAGGCAACCTGAAACTAAGGCAATTATGACTTGGCTGAGAGATATACGATTCACAGCGTCGGCTACTCTGCACGGGgtaattttcctgtagcagacttgtgcatactataacgtcttaagtatgtccaatttgaaagtttactttcaagat-tatgggagggggttttcaatgtaatgtcaaggaaaatcttgattcaatgtgaaaaaaatatttgctaaaccagcttttgttttag
|  | | ||||| ||   | |||   ||||||||||||| |  || || |||| |||| |||||||||||||||||||||| || || ||| |||| |||||| |  | || | | |      | || |  ||||  |  |   |   |  | |||      ||| |||   ||| | |     ||| |   |  | || |  ||                                                        
TTTTATAAATGATGATGAGGATTCCCGGCAACCTGAAACAAGAGCGATAATGAATTGGTTGAGAGATATACGATTCACAGCATCTGCCACTTTGCATGGGgtattaattctttggaa------ttcacataataatttgcttgcttcattta-tttatttaattatttttgtgatgtctactctgggctgagctgtttatttccagt------------------------------------------------------