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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTTCCACCTCTTTGTGCGGAACTTAGGAATTTAGTTTTGCAACCAATAATCTTGCCAATGGTTCTAACTATAGCACAGTCTCAGgtaatcttaagtgataacgaaaactaattttatcttgaaaccactgactgaatgaatgcttgaaagttgaaacctaaaattacctttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G71410.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 8
GTGCTTCCACCTCTTTGTGCGGAACTTAGGAATTTAGTTTTGCAACCAATAATCTTGCCAATGGTTCTAACTATAGCACAGTCTCAGgtaatcttaagtgataacgaaaactaattttatcttgaaaccactgactgaatgaatgc-ttgaaag--ttgaaacctaaaattacctttgcag---------
|| |||||||| |||||||| || ||||||||| | ||  | || ||||| || || |||||||||||||| || ||| ||||||||||| |  ||  |  |          | ||  ||     ||   || | | | ||   |   |||  |  ||| ||   ||||| |   |||||          
GTCCTTCCACCACTTTGTGCAGAGCTTAGGAATGTGGTGATACAGCCAATGATTTTACCAATGGTTCTAACCATTGCAGAGTCTCAGgtactaatatctctttcttttcttcacttccat---agaatacctaaattagtgctcgtgctgacggcattgtaattaaaaatcaatattgcaccaagaaata

upper sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 8
GTGCTTCCACCTCTTTGTGCGGAACTTAGGAATTTAGTTTTGCAACCAATAATCTTGCCAATGGTTCTAACTATAGCACAGTCTCAGgta---atctt------aagtgataacgaa--aactaatttta-----tcttgaa-accactg-actgaa----tgaatgcttgaaagttgaaacctaaaattacctttgcag
|||||||||||||||||||| |||||| | ||||| ||  |||||||||| ||  | || |||||||| || |||||  |||||||||||   || ||      | ||||||| | |  |  |   |||      ||||||  |  | || ||||      |   |   | |   ||||   || ||| ||  || | ||
GTGCTTCCACCTCTTTGTGCAGAACTTCGAAATTTGGTGATGCAACCAATGATTCTTCCCATGGTTCTCACAATAGCGGAGTCTCAGgtattaattttgcttgcatgtgataatggataagttgtctttgacctttcttgagcatgattgcactgctgtcctatgtagataaccattgatgtcttaaaatatatt-gtag