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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGTAAAATCAGAATACAGGCGCTGCCAAATAAACCTCCACCCAGATCTTTTCCAACTCCACTCGAGCGCCCTTCTACTGATCTTACTTTGTTACGCAGgttagtgaactcttgactgctgcagtctttgcagtttattgtctcactacttttcactcaattaatagccatatgatttcag

Basic information

species Arabidopsis thaliana
transcript AT1G69340.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116483352|gb|EG525944.1|EG525944
EST:     TTTCCAACTCCACTCGAGCGCCCTTCTACTGATCTTACTTTGTTACGCAG                         GAACTCGAATCATCTTGATTCGTATTTGGATCCTGCCTTCATGTCCTTGAT
genomic: TTTCCAACTCCACTCGAGCGCCCTTCTACTGATCTTACTTTGTTACGCAGgttagtgaac ... atgatttcagGAACTCGAATCATCTTGATTCGTATTTGGATCCTGCCTTCATGTCCTTGAT
EST: gi|116484633|gb|EG527225.1|EG527225
EST:     TTTCCAACTCCACTCGAGCGCCCTTCTACTGATCTTACTTTGTTACGCAG                         GAACTCGAATCATCTTGATTCGTATTTGGATCCTGCCTTCAT
genomic: TTTCCAACTCCACTCGAGCGCCCTTCTACTGATCTTACTTTGTTACGCAGgttagtgaac ... atgatttcagGAACTCGAATCATCTTGATTCGTATTTGGATCCTGCCTTCAT
EST: gi|116483396|gb|EG525988.1|EG525988
EST:     TTTCCAACTCCACTCGAGCGCCCTTCTACTGATCTTACTTTGTTACGCAG                         GAACTCGAATCATCTTGATTCGTATTTGGATCCTGCCTTCATGTCCTTGAT
genomic: TTTCCAACTCCACTCGAGCGCCCTTCTACTGATCTTACTTTGTTACGCAGgttagtgaac ... atgatttcagGAACTCGAATCATCTTGATTCGTATTTGGATCCTGCCTTCATGTCCTTGAT