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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGGCAGATATTGGCATTAAAAATGGTCATATTGTTGGTATTGGGAAAGCAGGCAATCCAGATACCATGCATGGTGTGCAGAACAATATGCTTATTGGGgtaatttatttcactgtataaaacacagtaaataccattttggagtacttacttactttctcttgtttattttcttag

Basic information

species Arabidopsis thaliana
transcript AT1G67550.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67550.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 8
------TAAGGCAGATATTGGCATTAAAAATGGTCATATTGTTGGTATTGGGAAAGCAGGCAATCCAGATACCATGCATGGTGTGCAGAACAATATGCTTATTGGGgtaattt--atttcactgtataa----aacacagtaaataccattttgga--gtacttac-----ttactttctcttgtttattttcttag-----
       |||||||||||||| || ||| |||||| |||||||  | |||| ||||||||||| |||||||  ||||||||||  ||       ||| | ||||||||| |||  || | ||| |  ||    |  |  | | |||  ||||   |  || || |       | |||   |||  || || | |||      
AATTTTCAAGGCAGATATTGGTATCAAAGATGGTCTTATTGTTTCTCTTGGAAAAGCAGGCAACCCAGATATTATGCATGGTGCACA------CATGATCATTGGGgtagtttccatctgactatgcaatggaagtagtggagatatgatttcaaatcgtgctaatgggcactgcttgtacttcctttttcttttaaatcag