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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctgcttttttttgtgtttgactgtcccgtagagcgaacatatacattattgtgaactctagggcactggttaattcagatatcataaaacagcttgcttaattaatcgtagttcgtagatggcttacttggatagatcttgggattattttcttgatttctgacctttaaactcttctaattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G67325.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67325.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA11G36990.3 (Glycine max), 5'ss of exon 7
CGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctgcttttttttgtgtttgactgtcccgtagagcgaacatatacattattgtgaactctagggcactggttaattcagatatcataaaacagcttgcttaattaatcgtagttcgtagatggcttacttggatagatcttgggattattttcttgatttctgacctttaaactcttctaattgcag
 || ||||| ||||||||||| || ||||| ||||| || || |||||||||||||| || |||||||| ||||||||||| || || ||||| || ||||| ||  |||  ||| ||| | |||  |  |  |||       |  | |  ||| | || |||| |     | |||  ||     || ||||        || ||   ||||   |  ||  || |||  | || | | | ||| |     |         |                               
TGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCACAGgtctg--ctgtctttatttctattttgc-atatcgtg------atttgtgaattttggttaacttttttataatggaaaa----aatttcat--------ttact-gtttaacatttttttttaaatgtttaacattgttggatgtgaatgtcgggccgcag-------------------------------

upper sequence: AT1G67325.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA18G00920.2 (Glycine max), 5'ss of exon 7
CGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctgcttttttttgtgtttgactgtcccgtagagcgaacatatac-attattgtgaactctagggcactggttaattcagatatcataaaacagcttgcttaattaatcgtagttcgtagatggcttacttggatagatcttgggattattttcttgatttctgacctttaaactcttctaattgcag
 || ||||| ||||||||||| || ||||| ||||| || || |||||||||||| | || |||||||| ||||||||||| || || ||||| || ||||| ||  |||| ||| ||| | ||   |  |   ||      |   | ||  ||       || |       ||||  ||| |    | |  |     |   || ||||   || || |   ||  ||| ||  |                                                           
TGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctg--ctgcctttatttctattgtgc-atattgtgattaaattttttatgatggaaaaaaaattccatttactgtctaactttttttttctttttaa---tgtttaac--attgttggatgtgaatgtctggccgcag------------------------------------------------------

upper sequence: AT1G67325.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv01s0010g03700.t01 (Vitis vinifera), 5'ss of exon 7
CGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctgcttttttttgtgtttgactgtcccgtagagcgaacatatacattattgtgaactctagggcactggttaattcagatatcataaaacagcttgcttaattaatcgtagttcgtagatggcttacttggataga-tcttgggattat-tttcttgatttctgacctttaaactcttctaattgcag
 |||||||| ||||| ||||| || ||||| ||||| |||||||| || |||||||| |||||||||||||||||||| || ||||| ||||| || |||||||| || || |||      |||| |   |   ||||| | |   | |     ||| | ||    |  |||   |  | ||    ||||||  || ||| |  |     |     |  |   | ||     | |    | || |||| | | ||| ||| ||  ||||| |   ||   |||||  || |||||
TGATAATGACTGGACCTGTCCTAAATGTGGAAATGTCAACTTCTCTTTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCACAGgtttgagcagcgtttc-----gtttaagaat---gtagaactagattgt----catttttaatatcacagcat--gaaagttt---tatcattcaatagccttttcttggatgttaaacttaaaaatctaacaatcaattggaatctttgtagtatgtttattactttctaataattct-ctcttgcaaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116475626|gb|EG518218.1|EG518218
EST:     GAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAG                         --GG-TGGAAGCTCAGATAAAATATCCA
genomic: GAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctg ... ctaattgcagCAGGGTGGAAGCTCAGATAAAATATCCA
EST: gi|125197996|gb|EL212950.1|EL212950
EST:     TGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAG                         CAGGGTGGAAGCTCAGATAAAATATCCA
genomic: TGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctg ... ctaattgcagCAGGGTGGAAGCTCAGATAAAATATCCA
EST: gi|116485681|gb|EG528273.1|EG528273
EST:     GAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAG                         CAGGGTGGAAGCTCAGATAAAATATCCA
genomic: GAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctg ... ctaattgcagCAGGGTGGAAGCTCAGATAAAATATCCA
EST: gi|116485680|gb|EG528272.1|EG528272
EST:     GAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTTTCAG                         CAGGGTGGAAGCTCAGATAAAATATCCA
genomic: GAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctg ... ctaattgcagCAGGGTGGAAGCTCAGATAAAATATCCA
EST: gi|116475625|gb|EG518217.1|EG518217
EST:     GAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAG                         --GG-TGGAAGCTCAGATAAAATATCCA
genomic: GAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctg ... ctaattgcagCAGGGTGGAAGCTCAGATAAAATATCCA