Sequence
atgc intronic sequence ATGC exonic sequenceTTCACATGACAGACGAAGATGCAGTTGGAAAACCTGGAAAAATTGCGTCTTATCTTGTTGTTACCCATCAACATAGCACCATTCAAAGAGCTGTAGACAGgttccgcttctagtccatattacaagatacgtttttgcagcttttgcttcatcccttgagtaatatttgtttcttctattcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G65410.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G65410.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA09G38730.1 (Glycine max), 5'ss of exon 8
TTCACATGACAGACGAAGATGCAGTTGGAAAACCTGGAAAAATTGCGTCTTATCTTGTTGTTACCCATCAACATAGCACCATTCAAAGAGCTGTAGACAGgttccgcttctagtccata-ttacaagatacgtttttg-cagcttttgcttcatcccttgagtaatatttgtttcttctattcag----------------------
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TGCACATAAAAGGACGAGATGCACGTGGAAAACCTGGGAATATTGCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGgtaagaatatt--ttcataatgattgcatgtcttcctgtcccctgaagcctcttaatttgcccagaattcatgtgtcctgatatgcaaagttacttcataaatacag
upper sequence: AT1G65410.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA18G47600.1 (Glycine max), 5'ss of exon 8
-TTCACATGACAGACGAAGATGCAGTTGGAAAACCTGGAAAAATTGCGTCTTATCTTGTTGTTACCCATCAACATAGCACCATTCAAAGAGCTGTAGACAGgttccgcttctagtccatatt-acaagatacgtttttg-cagcttttgcttcatcccttgagtaatatttgtttcttctattcag---------------------
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GTGCACATAAAAGGACAAGATGCACGTGGAAAACCTGGGAATATTTCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAggtaagaatatt--ttcataatgattgcatgtcttcctgtcccctgaagcctcttaatttgcccagaattcatgtgtcctgatatgcaaagttacttcataaatacaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124772428|gb|EH862557.1|EH862557EST: TCTTGTTGTTTACCCATTCAACATAGCACCATTCAAAGAGCTGTAGACAG GTTATTGTTTCTGTATGAAGGAAAGATCGTTTGG
genomic: TCTTGTTG-TTACCCA-TCAACATAGCACCATTCAAAGAGCTGTAGACAGgttccgcttc ... ttctattcagGTTATTGTTTCTGTATGAAGGAAAGATCGTTTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCACATGACAGACGAAGATGCAGTTGGAAAACCTGGAAAAATTGCGTCTTATCTTGTTGTTACCCATCAACATAGCACCATTCAAAGAGCTGTAGACAGgttccgcttctagtccatattacaagatacgtttttgcagcttttgcttcatcccttgagtaatatttgtttcttctattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT