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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAATAAGGCTATTGGAGCATCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTTGACCAGTATGGACAAACCATTTTGGATTTACTTTTGGCTGAGgtaagaatattgttaatatatatgatacttgatacagaacgcaatgaatcatatatgcttttttttttgctgtatatgcaactcttttgcttcttccag

Basic information

species Arabidopsis thaliana
transcript AT1G62290.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G62290.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA07G39240.1 (Glycine max), 5'ss of exon 9
GATAAATAAGGCTATTGGAGCATCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTTGACCAGTATGGACAAACCATTTTGGATTTACTTTTGGCTGAGgtaagaatattgttaatatatatgatacttgatacagaacgcaatgaatcatata--tgcttttttttttgct---gtatatgcaactcttttgcttcttccag--------------
||||||  | || |||||||||||||||||| | |||||  | ||||||||||||||||   ||||||||||||| || |||||||| |||||| |||| || ||  ||   ||  | ||  |  | ||     || |      |  || | ||   ||| | |  |  ||     |||| |   |    | || || || ||               
GATAAACCATGCAATTGGAGCATCTGGAGTTATGAGCCAAGAATGCAAGACTGTTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGTCTGAAgtgag--taccatt--tgtaatttgttctccccgcatattttggtttattagattcttgcctatgatcatgagtgggtatgtttgaaagatctgattttttcacttgacaccttttag

upper sequence: AT1G62290.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA07G39240.2 (Glycine max), 5'ss of exon 9
GATAAATAAGGCTATTGGAGCATCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTTGACCAGTATGGACAAACCATTTTGGATTTACTTTTGGCTGAGgtaagaatattgttaatatatatgatacttgatacagaacgcaatgaatcatata--tgcttttttttttgc---tgtatatgcaactcttttgcttcttccag--------------------
||||||  | || |||||||||||||||||| | |||||  | ||||||||||||||||   ||||||||||||| || |||||||| |||||| |||| || ||  ||   ||  | ||  |  | ||     || |      |  || | ||   ||| | |  |  ||     |||| |   |    | || || || ||                     
GATAAACCATGCAATTGGAGCATCTGGAGTTATGAGCCAAGAATGCAAGACTGTTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGTCTGAAgtgag--taccatt--tgtaatttgttctccccgcatattttggtttattagattcttgcctatgatcatgagtgggtatgtttgaaagatctgattttttcacttgacaccttttagacacag

upper sequence: AT1G62290.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA17G01500.1 (Glycine max), 5'ss of exon 9
GATAAATAAGGCTATTGGAGCATCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTTGACCAGTATGGACAAACCATTTTGGATTTACTTTTGGCTGAGgtaagaat-attgttaatatatatgatacttgatacagaacgcaatgaatcat-atatgcttttttttttgctgtatatgcaactcttttgcttcttccag-------------------------
||||||  | || |||||||||||||||||| | |||||  | ||||||||  ||||||   ||||||||||||| || |||||||| ||||||||||| || || |  |||  |||| | | |    ||  |||         || |||  | ||  |    | | ||||    |||||    |||  |  || |||                            
GATAAACCATGCAATTGGAGCATCTGGAGTTATGAGCCAAGAATGCAAGACCATTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGGCTGAAgtgagtaccatttgtaatttgt-tctccctgcatattttggttgattaatggtcatgagtgggtatgtttgaaagatatgattttctaataatttttcttatgtttttcgcttttgcaccttttag

upper sequence: AT1G62290.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 9
GATAAATAAGGCTATTGGAGCATCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTTGACCAGTATGGACAAACCATTTTGGATTTACTTTTGGCTGAGgtaagaatattgttaatat-atatgatacttgatacagaacgcaatgaatcatatatgcttttttttttgct-gtatatgcaactcttttgcttcttccag-----------------------------------------------------------------------------------------------
||||||| | || ||||||||  | ||||||||||||||| | ||||||||||| ||||  ||||||||  |||| ||  |||||||||||||  | ||||| |  |   | ||  ||| || |  ||  |  |  |       |     || ||    |    |   ||||   | |||   | | ||   || |   |                                                                                                
GATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGCCAGGAATGCAAGACTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacactatctttttattatcttttatctagtttaatttctcaatctccagattacttcacatggctgctcaaacatgttccacattacgttttcataactggggaggtgttactggcgttaattgtttccagaatatgtctaatgtacttctataattaactgactacatcttttggattttgtattttacag

upper sequence: AT1G62290.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: PP1S93_73V6.1 (Physcomitrella patens), 5'ss of exon 6
GATAAATAAGGCTATTGGAGCATCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTTGACCAGTATGGACAAACCATTTTGGATTTACTTTTGGCTGAGgtaa---gaatattgttaatatatatgatacttgatacagaacgca---atgaatcatatatgcttttttttttgctgtatatgcaactcttttgcttcttccag
 || ||  |||| ||||| ||  |||| ||||||||||||||||||||||  |||||| | ||||||||  |    ||| | ||  | || || ||| ||||||    || | | ||  | | || | || ||||||  ||        ||| |     |  |  | ||   ||    ||  || ||       |  |       
AATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGCCAGCAGTGCAAGATGGTTGTTCAGCAGTATGGTGACCAGATTGTTGAGATGCTCTTAGCTCAGgtaacttaaaaaatattgct-tttacgtta-ttgatatggattatgttcatgtactgccttggagtattgaattttcttaggtgaaaggtgcacgagtgcaa---