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21 5' 3' |
TGAGCAATTGGTTAGCAGTGCTGAAGGCACAAGGGCAATAGCTTTGGAGCTTTGTCGTGAGTTTGAAGACAAATTTCTTCTCCATTTAGCTGGTGGTGAAgtgagtaatttcctacgttagctgaaccatactttagccttttcatttttctagttgttatggaaaatgtgtggtactgtttaaatatagacaattaaga...
species | Arabidopsis thaliana |
transcript | AT1G59610.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTTGTCGTGAGTTTGAAGACAAATTTCTTCTCCATTTAGCTGGTGGTGAA GGAAGTGGTTGGAAAGTTGTTGCAAEST: gi|125183689|gb|EL198643.1|EL198643
genomic: TTTGTCGTGAGTTTGAAGACAAATTTCTTCTCCATTTAGCTGGTGGTGAAgtgagtaatt ... tttggttcagGGAAGTGGTTGGAAAGTTGTTGCAA
EST: TTTGTCGTGAGTTTGAAGACAAATTTCTTCTCCATTTAGCTGGTGGTGAA GGAAGTGGTTGGAAAGTTGTTGCAAGTTTTGEST: gi|125235693|gb|EL249778.1|EL249778
genomic: TTTGTCGTGAGTTTGAAGACAAATTTCTTCTCCATTTAGCTGGTGGTGAAgtgagtaatt ... tttggttcagGGAAGTGGTTGGAAAGTTGTTGCAAGTTTTG
EST: TTTGTCGTGAGTTTGAAGACAAATTTCTTCTCCATTTGGCTGGTGGTGAA GGAAGTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTEST: gi|125186089|gb|EL201043.1|EL201043
genomic: TTTGTCGTGAGTTTGAAGACAAATTTCTTCTCCATTTAGCTGGTGGTGAAgtgagtaatt ... tttggttcagGGAAGTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTT
EST: TTTGTCGTGAGTTTGAAGACAAATTTCTTCTCCATTTAGCTGGTGGTGAA GGAAGTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCA
genomic: TTTGTCGTGAGTTTGAAGACAAATTTCTTCTCCATTTAGCTGGTGGTGAAgtgagtaatt ... tttggttcagGGAAGTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCAATTGGTTAGCAGTGCTGAAGGCACAAGGGCAATAGCTTTGGAGCTTTGTCGTGAGTTTGAAGACAAATTTCTTCTCCATTTAGCTGGTGGTGAAgtgagtaatttcctacgttagctgaaccatactttagccttttcatttttctagttgttatggaaaatgtgtggtactgtttaaatatagacaattaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggaaaa