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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGAGAGTGTAGAAGCTGCAATTGTGAGGCTCCAGGAAGAAGTTAAGAATTGCAAAAACATCCTCAAATGTGGTGTATGTTTTGATCGGCCTAAAGAGgtaacaatgctcataacaatcctatatctcactgtcaaggcagacataatgattcgataatcctttctcatcactgtcataatcatcatcaatagtcatatatcatgcatcagaaaatatcattttcag

Basic information

species Arabidopsis thaliana
transcript AT1G55250.4
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55250.4 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G341271_T02 (Zea mays), 5'ss of exon 19
TTCTGAGAGTGTAGAAGCTGCAATTGTGAGGCTCCAGGAAGAAGTTAAGAATTGCAAAAACATCCTCAAATGTGGTGTATGTTTTGATCGGCCTAAAGAGgtaacaatgctcataacaatcctatatctca-------ctgtcaaggcagacataatgattcgataatcct-----ttctcatcactgtcataatcatcatcaatagtcatatatcatgcatcagaaaatatcattttcag---------------
 ||||||| || |||  || |  |   ||  ||  |||| ||| | ||  | |||||    || ||||| ||||||||||| ||||| ||||||||||||||||||       ||     | | | |||||        | |  |||   |||  ||  || | |   ||      |||   |  || |  |    || ||||||  |      | |     |    | | |  ||||| |               
CTCTGAGACTGAAGAGACTACTGTCCGGAAACTTGAGGATGAAATAAAAGAATGCAAGGGTATTCTCAAGTGTGGTGTATGCTTTGACCGGCCTAAAGAGgtaacatataatgtactgtacgtgtttctcaatcatgattttagaggtttacaccattcttagctccaccacgaagttcctgtttctttgttgg--atgatcaattttgccgcctaaactgacgaggattgtatttttctgtatattcgttgacag