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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGATACAGATCATGATTTCTTAATCGACAAAGAGAATCTCATCCGATATAGTAACCATGCGCTCACCTATAGGATTGTCGATCGAATCTTTTCACAGgttagctactccacatctgcatttcttatttttaaaaaacttttttctactagctgccgaatgtctttgtcactcggtctacttaatag

Basic information

species Arabidopsis thaliana
transcript AT1G54450.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G54450.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA19G43790.1 (Glycine max), 5'ss of exon 8
GTTGGATACAGATCATGATTTCTTAATCGACAAAGAGAATCTCATCCGATATAGTAACCATGCGCTCACCTATAGGATTGTCGATCGAATCTTTTCACAGgttagc---tact-ccacatc-tgcatttcttatttttaaaaaacttttttctacta------gctgccgaatgtctttgtcactcggtctacttaatag--------------------------------------------------------------------------------------------
| |||||||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||||| |||||| | ||||| ||| |||| ||||| |||||| |     | | | | ||| ||  || ||| | | |  | |  |   |||  ||       ||  | ||    |    || ||    || |     |                                                                                             
GCTGGATACAGATCATGATTTCTTGATAGACAAAGAGAATCTCATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgttggtgtggattactatatcatgtgttgcttctgtcttgagatttgacttcagctgtctagggccacagacaacccaaatccctacccctcccctccaaataacatgcactgtcctttcacttatgtttatatgaattatcagagcatttgttgaagatgcagattttgattcacttcaatattatctcag

upper sequence: AT1G54450.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA03G41180.1 (Glycine max), 5'ss of exon 8
GTTGGATACAGATCATGATTTCTTAATCGACAAAGAGAATCTCATCCGATATAGTAACCATGCGCTCACCTATAGGATTGTCGATCGAATCTTTTCACAGgttagc---tact-ccacatc-tgcatttcttatttttaaaaaacttttttctacta------gctgccgaatgtctttgtcactcggtctacttaatag--------------------------------------------------------------------------------------------
| |||||||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||||| |||||| | ||||| ||| |||| ||||| |||||| |     | | | | ||| ||  || ||| | | | || |  |   |||  ||       ||  | ||    |    || ||    || | |   |                                                                                             
GCTGGATACAGATCATGATTTCTTGATAGACAAAGAGAATCTCATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgttggtgtggattactatatcatgtgttgcttctgtcttaagatttgacttcagctgtctagggccacagacaacccaaatccctacccctccctccaaatacacatgcactgtcctttcacttatgtttatatgaattaccagagcatttgttgaagatgcagattttgattcactttaatattatctcag

upper sequence: AT1G54450.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 8
GTTGGATACAGATCATGATTTCTTAATCGACAAAGAGAATCTCATCCGATATAGTAACCATGCGCTCACCTATAGGATTGTCGATCGAATCTTTTCACAGgttagctactccacatctgcatttcttatttttaaaa---aacttttttctactagctgccgaatgtctttgtcactcggtctacttaatag-------------------------------------------------------------------------------------------
| ||||||||||||| ||||||||||| |||||||||||||| ||| ||||| ||||||||||||| |||||| | ||||| ||| |||| ||||| |||||| | |       |  ||    |  | | ||| | |   |||| |||   |||  | ||   |   | |   | |    |||   |||                                                                                              
GCTGGATACAGATCACGATTTCTTAATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtttg-tgtggattacttgttgcttctgtctttgagatttaactgtttctgactt-cagcaacagaccctataccccttttctttctaacgcaagaagtgtttggttcagtgtccattcatttttttttatcagatcattttatagaagatgcagattctgacttgctttattattgtctcag

upper sequence: AT1G54450.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA20G36530.1 (Glycine max), 5'ss of exon 8
GTTGGATACAGATCATGATTTCTTAATCGACAAAGAGAATCTCATCCGATATAGTAACCATGCGCTCACCTATAGGATTGTCGATCGAATCTTTTCACAGgttagctactccacatctgcatttcttatttttaaaa---aacttttttctactagctgccgaatgtctttgtcactcggtctacttaatag-----------------------------------------------------------------------------------------
| ||||||||||||| |||||||| || |||||||||||||| ||| ||||| ||||||||||||| |||||| | ||||| ||| |||| ||||| |||||| | |       |  ||    |  | | ||| | |   || | |||   |||  | ||   |   | |   | |    |||   |||                                                                                            
GCTGGATACAGATCACGATTTCTTTATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtttg-tgtggattacttgttgcttctgtctttgagatttaaatgtttatgactt-cagcaacagaccctataccccttctctttctaacgcaagaagtgtttggttcagtgtccatccacttttgtttatcagatcatttattgaagtgcagattctgacttgcttcagtattgtctcag