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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACTCGCTTAAGGCTTCTTGGTGACCAAGTGCATTCTACTCGCATAGCTTTTGTTGAATTTGCCATGgtaaactcctgttaaaactcagcttctgtgtcctcttttgttagtgttaacaagtaaagctgaacttttcaaggcttagtttttacttaacaactgaatatgcgtttgtttacgggataaaaag

Basic information

species Arabidopsis thaliana
transcript AT1G53650.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G53650.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 8
GTTACTCGCTTAAGGCTTCTTGGTGACCAAGTGCATTCTACTCGCATAGCTTTTGTTGAATTTGCCATGgtaaactcctgttaaaactcagcttctgtgtcctcttttgttagtgttaacaagtaaagctgaacttttcaaggcttagtttttacttaacaactgaatatgcgtttgtttacgggataaaaag
||||  ||| | |||||| | || |||||||||||||| ||||| || |||||||| |||||||| |||||||  || ||   | ||| || |     | | |   |||   |   ||      |       | |||   ||  | | |   |  | ||||||| | |   | | |||| |            
GTTATGCGCCTTAGGCTTTTAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGgtaag-tcttgactatact-agtt-----gccattaattggctgcacta-----cactttcatagtttatgagaataactgcatcatgaacaacttattcaacctatgttga------------

upper sequence: AT1G53650.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 8
GTTACTCGCTTAAGGCTTCTTGGTGACCAAGTGCATTCTACTCGCATAGCTTTTGTTGAATTTGCCATGgtaaactcctgttaaaactcagcttctgtgtcctcttttgttagtgttaacaagtaaagctgaacttttcaaggcttagtttttacttaacaactgaatatgcgtttgtttacgggataaaaag
||| ||||| | |||||| | || || || |||||||| || || |||||||||||||||||||| ||||| |  |  | | | |     | |    | | |    |||     ||||   | |     |   ||| |  ||| | | ||  || ||      |  || |    ||                 
GTTTCTCGCCTGAGGCTTTTAGGGGATCATGTGCATTCGACGCGTATAGCTTTTGTTGAATTTGCAATGgtgagtttgtatgacagt---gttgacatattcaggcttgccca-gtta--catttttattaggcttgttgaggat-acttgatagtttctgtttttatctataatt-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164043316|gb|ES151818.1|ES151818
EST:     GCTTTTGTTGAATTTGCCATG                         GCAGAGAGTGCAGTTGCAGCGCTAAACTGCAGCGGAATAGTCTTAGGATCT
genomic: GCTTTTGTTGAATTTGCCATGgtaaactcct ... ggataaaaagGCAGAGAGTGCAGTTGCAGCGCTAAACTGCAGCGGAATAGTCTTAGGATCT