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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCAGACTTTGGTGTTTCTGCACAATTAACCCGGACTATATCAAGGCGAAAGgtacttatcttattatactaatgaatctcctgactctatatcgtgtttcgttcttcatcatttattgtgcttactgatccagtaattaggggtgctctta...

Basic information

species Arabidopsis thaliana
transcript AT1G53165.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G53165.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA12G35510.1 (Glycine max), 5'ss of exon 7
GTTGCAGACTTTGGTGTTTCTGCACAATTAACCCGGACTATATCAAGGCGAAAGgta--cttatcttattatactaatgaatctcctgactctatatcgtgtttcgttcttcatcatttattgtgcttactgatccagtaattaggggtgctctta
|||||||| |||||||||||||| ||||||||  |||||||||||||| ||||||||  | ||| |||||  | | |          ||     ||| |  | | ||  ||  |  || |||    |||  |    ||| ||    | |  | |  
GTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACTATATCAAGGAGAAAGgtaaacatattttattgaagttaattgaaagtggatgggctattg-atatagtattttttttttcattacatttagagtaaaagttatgtctgttatttta-

upper sequence: AT1G53165.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA06G36130.3 (Glycine max), 5'ss of exon 7
GTTGCAGACTTTGGTGTTTCTGCACAATTAACCCGGACTATATCAAGGCGAAAGgtacttatcttattatactaatgaatctcctgactctatatcgtgtttcgttcttcatcatttattgtgcttactgatccagtaattaggggtgctctta
|||||||| ||||||||||||||||| |||||  | |||||||||||| ||||||||   | | ||||  | ||||||   |  | | |    |  |   ||| ||       | |   | |||| | || |    ||| ||  |         
GTTGCAGATTTTGGTGTTTCTGCACAGTTAACAAGAACTATATCAAGGAGAAAGgta---aacatatttaattaatgataatattaatt----agtgcacttcatttcg----actggatatgctaattg-tttgataactacag---------

upper sequence: AT1G53165.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA13G34970.1 (Glycine max), 5'ss of exon 8
GTTGCAGACTTTGGTGTTTCTGCACAATTAACCCGGACTATATCAAGGCGAAAGgta--cttatcttatt-atactaat---gaatctcctgactct--atatcgtgtttcgttcttcatcatttattgtgcttactgatccagtaattaggggtgctctta
|||||||| |||||||||||||| ||||| ||  |||||||||||||| ||||||||  | ||| | ||| |   ||||    | |     |  | |  |||| || |||  ||      ||||||  ||      |    | || |||    |        
GTTGCAGATTTTGGTGTTTCTGCTCAATTGACAAGGACTATATCAAGGAGAAAGgtaaacatatttcattgaagttaattgaaagtggatgggttattgatatagtattttttttcattacatttagagtaaaagttatgtctgttattttatg--------

upper sequence: AT1G53165.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA12G27300.1 (Glycine max), 5'ss of exon 8
GTTGCAGACTTTGGTGTTTCTGCACAATTAACCCGGACTATATCAAGGCGAAAGgtacttatcttattatactaatgaatctcctgactctatatcgtgtttcgttcttcatcatttattgtgcttactgatccagtaattaggggtgctctta
|||||||| ||||||||||||||||| |||||  | |||||||||||| ||||||||   | | ||||  | ||||||   |  ||| |    |  |   ||| ||  |||  | |   | |||| | || |  | ||| |   |         
GTTGCAGATTTTGGTGTTTCTGCACAGTTAACAAGAACTATATCAAGGAGAAAGgta---agcatatttaattaatgataatattgatt----agtgcacttcatt--tca--actggatatgctaattgtttgaataactgcag---------