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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACGAGAAGGATCAACTTCCATGGCAGCTTTCCAAGTTTGCTTGCAGGTTTGGTTAGCTACTTCACTTCTTGCAGACGGGTACGCCGTAGCTGGCCAGgtttttagataatgatgtctctaacattgcatccttttacgattaagcgcgtggtttaaagttttaacaaatgtcttttcctttag

Basic information

species Arabidopsis thaliana
transcript AT1G51340.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G51340.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv06s0004g02140.t01 (Vitis vinifera), 5'ss of exon 8
TGCACGAGAAGGATCAACTTCCATGGCAGCTTTCCAAGTTTGCTTGCAGGTTTGGTTAGCTACTTCACTTCTTGCAGACGGGTACGCCGTAGCTGGCCAGgtt-----tttagataatgatgtctctaacattgcatccttttacgatt--aagcgcgtggtttaaagttttaacaaatgtcttt-tcctttag
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TGCACGCCAGGGACCAACATCCATGGCTGCATTCCAGGTCTGCTTGCAGGTTTGGTTGGCAACGTCTCTTCTTGCTGATGGCTTAGCGGTCGCCGGGCAGgttagaagtgcagatctttata-ctctcatcttggacaaatttgttttttgaggctctctttctttgaacttaccagtcttcaaaatttttcag