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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTGGAACAAATACTCGGGGTACTTATAAAGCTTGTGAAGGATCTAAAGTTAGAACATCAACACAAATATgtaagggtttcagtgttttccaattgatttaaatgctgcctgttcatatatagcttactctatatattgtcacag

Basic information

species Arabidopsis thaliana
transcript AT1G50710.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164109172|gb|ES174094.1|ES174094
EST:     ACTTATAAAGCTTGTGAAGGATCTAAAGTTAGAACACTCAACACAAATAT                         AATGAGATGCAGAAGACTTGGTTGTGTAAA-GGTGTGAGACCATGAA
genomic: ACTTATAAAGCTTGTGAAGGATCTAAAGTTAGAACA-TCAACACAAATATgtaagggttt ... attgtcacagAATGAGATGCAGAAGACTTGGTTGTGTAAAAGGTGTGAGACCATGAA
EST: gi|164170535|gb|ES170514.1|ES170514
EST:     TACTTATAAAGCTTGTGAAGGATCTAAAGTTAGAACATCAACACAAATAT                         AATGAGATGCAGAAGACTTGGTTGTGTAAA-GGTGTGAGACCATGAA
genomic: TACTTATAAAGCTTGTGAAGGATCTAAAGTTAGAACATCAACACAAATATgtaagggttt ... attgtcacagAATGAGATGCAGAAGACTTGGTTGTGTAAAAGGTGTGAGACCATGAA