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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTCAGTCGAGTTTGAAGTCGCTGATTGCACCACCAAAACATATCCCGATAATTCCTTTGATGTCATTTACAGCCGTGACACTATTCTGCACATCCAAgtataagcaaagctactcaatatattatatatatatttgttctttcactcttgaagatggtttttggtaatcatcctctgcaccctttatctctgttcag

Basic information

species Arabidopsis thaliana
transcript AT1G48600.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G48600.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os01g50030.1 (Oryza sativa), 5'ss of exon 8
ATGCTCAGTCGAGTTTGAAGTCGCTGATTGCACCACCAAAACATATCCCGATAATTCCTTTGATGTCATTTACAGCCGTGACACTATTCTGCACATCCAAgtataagcaaagctactcaatatattatatatatatttgttctttcactcttgaagatggtttttggtaatcatcctctgcaccctttatctctgttcag---
 |||||||| |||||||||||||||||||||||||  || ||||| || || ||  | ||||| ||||| ||||| ||||| ||||| || ||||| ||||||      |  | | |   || |    || |  || | || ||||   || |   || | | |    |  |  |  | |      |  | || | |      
GTGCTCAGTTGAGTTTGAAGTCGCTGATTGCACCAAAAAGACATACCCAGACAACACGTTTGACGTCATCTACAGTCGTGATACTATCCTTCACATACAAgtacgttttacac-attatttacaacccatttggatgttttgtttcttcctggtttattgctct--acagcctacaacagtttaaatattttcagcttgaaat

upper sequence: AT1G48600.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G060886_T01 (Zea mays), 5'ss of exon 8
ATGCTCAGTCGAGTTTGAAGTCGCTGATTGCACCACCAAAACATATCCCGATAATTCCTTTGATGTCATTTACAGCCGTGACACTATTCTGCACATCCAAgtataag-caaagctactcaatatattatatatatatttgttctttcactcttgaagatggtttttggtaatcatcctctgcaccctttatctctgttcag
 |||||||| ||||||||||| ||||||||||| || || ||||| || || ||  | ||||||||||| ||||||||||| ||||| || ||||| || ||||    ||||  ||  |  | |   || ||    ||| |||     |        | |  |  ||    |      || |||    |    ||    ||
TTGCTCAGTGGAGTTTGAAGTTGCTGATTGCACTACGAAGACATACCCAGACAACACATTTGATGTCATATACAGCCGTGATACTATCCTTCACATACATgtatgtttcaaatatatcctgtttcagatgtacgctttt-ttcagaagccacccttaacgcatcgtgaagttttaaaactacacgaaatgatacttgagag

upper sequence: AT1G48600.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv17s0000g02430.t01 (Vitis vinifera), 5'ss of exon 8
ATGCTCAGTCGAGTTTGAAGTCGCTGATTGCACCACCAAAACATATCCCGATAATTCCTTTGATGTCATTTACAGCCGTGACACTATTCTGCACATCCAAgtataagcaaagctactcaatatattatatatatatttgttctttcactcttgaagatggtt-tttggtaatcatcctctgcaccctttatctctgttcag
 |||||||| || || || || ||||| |||||||  ||| ||||||| || ||  | |||||||| || |||||||||||||| ||||| ||||| |||||| |   |    |  |   | | |   |  | |   || |  | ||    | ||  |  || ||  |   | ||  |||    || ||   |  |   ||
GTGCTCAGTTGAATTCGAGGTAGCTGACTGCACCAAGAAATCATATCCTGACAACACATTTGATGTGATCTACAGCCGTGACACCATTCTTCACATTCAAgta-atatacctttcttttttctgtgggacttttgaatggttatgcatctgttaattttattattctgcctttatattctagttccatttggttcgaaaag

upper sequence: AT1G48600.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv01s0011g05200.t01 (Vitis vinifera), 5'ss of exon 8
ATGCTCAGTCGAGTTTGAAGTCGCTGATTGCACCACCAAAACATATCCCGATAATTCCTTTGATGTCATTTACAGCCGTGACACTATTCTGCACATCCAAgta----taagcaaagctactcaatatattatatatatatttgttctttcactcttgaagat------ggtttttggtaat---catcctctgcaccctttatctctgttcag--------------------------------------------------------------
||||   ||||| || || || |||||||||||||  ||||| ||||| |||||| | |||||||| || ||||||||||| || ||||| ||||| || |||    |   || | |   |  |    ||  ||  ||   || |     |||||  | |||        | |  |   ||   |||||     | ||   || | |  | |                                                               
ATGCCTGGTCGAATTCGAGGTTGCTGATTGCACCAAGAAAACGTATCCTGATAATACATTTGATGTGATCTACAGCCGTGATACCATTCTTCACATACAGgtagtcattttcacatcctttgcagcggtttcatgaat-catgataaacaactctgaaggatcttttgaatctccgaccatgcacatccaacatagccgaaattttttattattaattatggtttttccttttcttcatataccgccatctgatggtagctgtggaattttttag

upper sequence: AT1G48600.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv01s0011g05220.t01 (Vitis vinifera), 5'ss of exon 7
ATGCTCAGTCGAGTTTGAAGTCGCTGATTGCACCACCAAAACATATCCCGATAATTCCTTTGATGTCATTTACAGCCGTGACACTATTCTGCACATCCAAgta-taagcaaagctactcaat----atattatatatatatttgttctttcactcttgaagatggtttttggtaatcatcctctgcaccctttatctctgttcag
  |||  || || ||||| || || ||||||||||  ||||||||||| |||| | | |||||||| || ||||| |||||||||||||| ||||| |||||| | |       | ||  ||    || | |    ||    |||||| | |      |  | || | ||| ||||     | |||||  | | |   | |    
TCGCTTGGTTGAATTTGAGGTTGCAGATTGCACCAAGAAAACATATCCTGATAGTACATTTGATGTGATCTACAGTCGTGACACTATTCTTCACATACAAgtaatcattcctatttctttatccgaatttcacgattaaggctgttctgtgaacaactataaagggtcttgttaatt---ttgtgcacattctgttcttttct--