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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCCAAGAGAAAAATATCAAAGGGAAACACAGATTGCGTGGAGATATTAATGTACTTTTACTAGGTGATCCAGGAACAGCAAAATCACAATTTCTGAAgtaagaaaactatcctgaccagcttacttaattaatatctttggtgaatattttcattaactgcattaatgtttcttctag

Basic information

species Arabidopsis thaliana
transcript AT1G44900.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G44900.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os11g29380.1 (Oryza sativa), 5'ss of exon 10
GTGGCCAAGAGAAAAATATCAAAGGGAAACACAGATTGCGTGGAGATATTAATGTACTTTTACTAGGTGATCCAGGAACAGCAAAATCACAATTTCTGAAgtaagaaa------actatcctgaccagcttactta--attaatatctttggtgaatattt--tcattaactgcattaatgtttcttctag---
| || |||||||| ||| |||| || || ||  | ||| | |||||||| ||||||||  |  ||||||||||||| || |||||||| |||||||| ||||||| ||      |  |   | | || ||  |||   |||  |   ||   | |||||||  | ||  |    |||||       | | |   
GGGGGCAAGAGAAGAATGTCAAGGGAAAGCATCGCTTGAGAGGAGATATCAATGTACTCCTCTTAGGTGATCCAGGCACTGCAAAATCCCAATTTCTCAAgtaaggaataggcaatcagtttcatcatctctctttttattgctccattaactcaatatttcattatctaaaaaattaactcactgttttgtag

upper sequence: AT1G44900.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 9
GTGGCCAAGAGAAAAATATCAAAGGGAAACACAGATTGCGTGGAGATATTAATGTACTTTTACTAGGTGATCCAGGAACAGCAAAATCACAATTTCTGAAgtaagaa-------aactatcctg--accagctt-acttaattaatatctttggt-gaatattttcattaactgcattaatgtttcttctag
| |||||||| |||||| |  |||||||||| || ||||| ||||| || ||||||||| | || ||||||||||| || || |||||||| ||| | ||||||||        || ||  |||  |   |||| |||   || |||       | |  | ||  | |  |    |  | | ||||  | ||
GAGGCCAAGAAAAAAATGTTGAAGGGAAACATAGGTTGCGAGGAGACATAAATGTACTTCTCCTTGGTGATCCAGGCACTGCCAAATCACAGTTTTTAAAgtaagaccgaccccaattaatctgtgagtggcttgactggtttgataatagcaatcggttgttaacttccaaaaaaacattttttccccaag