Sequence
atgc intronic sequence ATGC exonic sequenceAGCATTTATAGTGAATCTTGGCGATATGCTGGAACGTTGGAGCAATGGCTTTTTTAAgtaatcttctaagttctaactaacaagttatagtgatttgaaagcaagtttttctagctaacatttttctcacatatgtatgaccttacag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G35190.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G35190.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA16G08470.1 (Glycine max), 5'ss of exon 8
AGCATTTATAGTGAATCTTGGCGATATGCTGGAACGTTGGAGCAATGGCTTTTTTAAgtaa-----tcttctaagttctaactaa--caagttatagtgatttgaaagcaagttttt---ctagctaacatttttctcacatatgtatgacct-tacag
|||||| |||||||||||||| || |||||||| || |||||||| || ||||||||||| |||| | || ||| || | || | | | ||| | || | || | ||| ||| | | ||| | ||
AGCATTCATAGTGAATCTTGGTGACATGCTGGAGCGCTGGAGCAACTGCGTTTTTAAgtaagaaatccttcccacttttaaatatttctgattttgaatgaaggcaggcatgcttctgatcttggaggagtttaaaagacaaaagattgatttgtat--
upper sequence: AT1G35190.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA01G01170.2 (Glycine max), 5'ss of exon 8
AGCATTTATAGTGAATCTTGGCGATATGCTGGAACGTTGGAGCAATGGCTTTTTTAAgtaa-----tcttctaagttctaactaa--caagttatagtgatttgaaagcaagttttt---ctagctaacatttttctcacatatgtatgaccttacag
|||||| |||||||||||||| || |||||||| || |||||||| | ||||||||||| ||| | || | | || | ||| || | ||| || | || | |||| | || ||||||| ||
AGCATTCATAGTGAATCTTGGTGACATGCTGGAGCGCTGGAGCAACTGTGTTTTTAAgtaagaaatctttcccacttatcaatatttctggttttaaatgaaggcgggcacacttctgaccttggaggaatttaaattg-atttgtatgatgggcaag
upper sequence: AT1G35190.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv11s0016g03200.t01 (Vitis vinifera), 5'ss of exon 8
AGCATTTATAGTGAATCTTGGCGATATGCTGGAACGTTGGAGCAATGGCTTTTTTAAgtaat-----cttctaagttctaactaacaagttatagtgatttgaaagcaagtttttctagctaacatttttctcacatatgtatga-ccttacag----
||| ||||||||||||||||| ||||||||||| || |||||||| | |||| ||||||| |||| || |||| | | | || ||| ||| | | || | | || | || || | |||||
AGCGTTTATAGTGAATCTTGGTGATATGCTGGAGCGCTGGAGCAACTGTATTTTCAAgtaatgtgcatttcttggtggtaacca-tggtccaaaatgcttttctgttccatttgataataagagatgtgttctggatttttaggagctttacaatattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86074628|gb|DR370385.1|DR370385EST: ATAGTGAATCTTGGCGATATGCTGGAACGTTGGAGCAATGGCTTTTTTAA ATCCACGTTGCATCGGGTTCTTGGAAACGGTCAGGAACGATATTCT
genomic: ATAGTGAATCTTGGCGATATGCTGGAACGTTGGAGCAATGGCTTTTTTAAgtaatcttct ... gaccttacagATCCACGTTGCATCGGGTTCTTGGAAACGGTCAGGAACGATATTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCATTTATAGTGAATCTTGGCGATATGCTGGAACGTTGGAGCAATGGCTTTTTTAAgtaatcttctaagttctaactaacaagttatagtgatttgaaagcaagtttttctagctaacatttttctcacatatgtatgaccttacag
- - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - GGAGCA