Sequence
atgc intronic sequence ATGC exonic sequenceGTGGTCTCTTGGAGCAATCATGTTCGAGATGCTTGTAGGGTTTCCGCCATTCTATTCCGAAGAACCTTTGGCAACATGTAGAAAGgtatgcatatattggcttaaatatcctgctagtacattattgcgcagtttggtataagattattcacgagtcctgatgatttacctcaaaattagcctat...
Basic information
species | Arabidopsis thaliana |
transcript | AT1G30640.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G30640.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv10s0003g05720.t01 (Vitis vinifera), 5'ss of exon 8
GTGGTCTCTTGGAGCAATCATGTTCGAGATGCTTGTAGGGTTTCCGCCATTCTATTCCGAAGAACCTTTGGCAACATGTAGAAAGgtatgcatatattggcttaaatatcctgctagtacattattgcgcagtttggtataagattattcacgagtcctgatgatttacctcaaaattagcctat--------
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GTGGTCTCTTGGGGCAATTATGTATGAGATGCTTGTGGGATATCCACCTTTTTATTCTGAGGAACCAATGTCAACATGCAGAAAGgtat--atgtgttgactttgttattccaattttttatcattt--tattttatttta----tttttgaaaatctgggaaaaatatcacaccagaggtttatcactatga
upper sequence: AT1G30640.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: PP1S86_100V6.1 (Physcomitrella patens), 5'ss of exon 7
GTGGTCTCTTGGAGCAATCATGTTCGAGATGCTTGTAGGGTTTCCGCCATTCTATTCCGAAGAACCTTTGGCAACATGTAGAAAGgtatgcat--atattggcttaaatatcctg-ctagtacattattgcgcagtttggtataagattattcacgagtcctgatgatttacctcaaaattagcctat
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GTGGTCACTTGGAGCAATCATGTACGAGATGCTAGTTGGCTACCCTCCATTTTACTCTGACGAACCTATGACAACTTGTCGCAAGgtgtgcaacaacctttactcatttacatgggttcattcattttttccaaaagctctataaatggatgtg---gtgcttttagttttgcaaatctcaggtttgt
upper sequence: AT1G30640.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: PP1S22_429V6.1 (Physcomitrella patens), 5'ss of exon 7
GTGGTCTCTTGGAGCAATCATGTTCGAGATGCTTGTAGGGTTTCCGCCATTCTATTCCGAAGAACCTTTGGCAACATGTAGAAAGgtatgcatatattggcttaaatatcctgctagtacattattgcgcagtttggtataagattattcacgagtcctgatgattta-cctcaaaattagcctat---
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GTGGTCATTGGGAGCAATCATGTACGAGATGCTGGTTGGGTACCCTCCATTTTACTCCGATGAACCTATGACAACATGTCGCAAGgtgtgta---acagcctctattcatctgcgtggattcatccgctca-cacgaaaaatctctatctgtgaagatggttcttccagctttcgaattctcagatctg
upper sequence: AT1G30640.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: EFJ28086 (Selaginella moellendorffii), 5'ss of exon 7
GTGGTCTCTTGGAGCAATCATGTTCGAGATGCTTGTAGGGTTTCCGCCATTCTATTCCGAAGAACCTTTGGCAACATGTAGAAAGgtatgc----atatattggct---------taaatatcctgctagta-----cattattgcgcagtttggtataagattattcacgagtcctgatgatt---tacctcaaaattagcctat----------------
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GTGGTCTCTTGGAGCTATAATGTACGAGATGCTAGTCGGGTATCCGCCCTTCTATTCCGACGAACCGATGTCTACTTGCCGGAAGgtacgccatcacatcttgattgactattcatgaattttgtactcgcttgcctcataactacgcatttttgtatt--tttatgtgtgattgttattgatcagatagcatcgcgttaagatgtcttgtttcattgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124950214|gb|EL025695.1|EL025695EST: AACCTTTGGCAACATGTAGAAAG ATTGTAAACTGGAAAACCTGCTTGAAGTTCCCTGATGAAGCTAAGCCCTCC
genomic: AACCTTTGGCAACATGTAGAAAGgtatgcatat ... atctctgcagATTGTAAACTGGAAAACCTGCTTGAAGTTCCCTGATGAAGCTAAGCTCTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGTCTCTTGGAGCAATCATGTTCGAGATGCTTGTAGGGTTTCCGCCATTCTATTCCGAAGAACCTTTGGCAACATGTAGAAAGgtatgcatatattggcttaaatatcctgctagtacattattgcgcagtttggtataagattattcacgagtcctgatgatttacctcaaaattagcctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC