1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCGTATGCTTCCTTTAACAAGACTGTACCCGAATATCGCGACCAAAGAAACTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAGgtaaaaagatataaacaatcttaaacttactttttcccgagttactctgttcttgctcaaacttcatttcgatgttttcggacgctgttttgcag
species | Arabidopsis thaliana |
transcript | AT1G29200.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAG CTAGCTGCACTAGATTTCATAGCTTGTATAGCATCAGATGTCTTTGCAATGEST: gi|116408966|gb|EG451558.1|EG451558
genomic: CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAGgtaaaaagat ... tgttttgcagCTAGCTGCACTAGATTTCATAGCTTGTATAGCATCAGATGTCTTTGCAATG
EST: CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAG CTAGCTGCACTAGATTTCATAGCTTGTATAGCATCAGATGTCTTTGCAATGEST: gi|116408964|gb|EG451556.1|EG451556
genomic: CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAGgtaaaaagat ... tgttttgcagCTAGCTGCACTAGATTTCATAGCTTGTATAGCATCAGATGTCTTTGCAATG
EST: CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAG CTAGCTGCACTAGATTTCATAGCTTGTATAEST: gi|116408967|gb|EG451559.1|EG451559
genomic: CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAGgtaaaaagat ... tgttttgcagCTAGCTGCACTAGATTTCATAGCTTGTATA
EST: CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTTTCAG CTAGCTGCACTAGATTTCATAGCTTGTATAGCATCAGATGTCTTTGCAATGEST: gi|116408965|gb|EG451557.1|EG451557
genomic: CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAGgtaaaaagat ... tgttttgcagCTAGCTGCACTAGATTTCATAGCTTGTATAGCATCAGATGTCTTTGCAATG
EST: CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAG CTAGCTGCACTAGATTTCATAGCTTGTATAGCATCAGATGTCTTTGCAATG
genomic: CTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAGgtaaaaagat ... tgttttgcagCTAGCTGCACTAGATTTCATAGCTTGTATAGCATCAGATGTCTTTGCAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGTATGCTTCCTTTAACAAGACTGTACCCGAATATCGCGACCAAAGAAACTCTCCTTACACCTCAAGAACTTGCGCCATTCAAGAACTTCTCTTCTCAGgtaaaaagatataaacaatcttaaacttactttttcccgagttactctgttcttgctcaaacttcatttcgatgttttcggacgctgttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC