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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAATCAGTTTCTCAACAGTAAGAGATAAGATCGCAGCAAAAACAAACTGGACAGTAAGCATGTTCCTTGATTGTGAAAGACGCAATTTTGTAGTTCAGgtgattttttcgtctcatgctgacttagcctaaaagtagagttagtaaaaagatcctgactctatcattacccgtttgtatcgaactctcaaatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G28240.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G28240.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA13G31260.1 (Glycine max), 5'ss of exon 8
TCAAATCAGTTTCTCAACAGTAAGAGATAAGATCGCAGCAAAAACAAACTGGACAGTAAGCATGTTCCTTGATTGTGAAAGACGCAATTTTGTAGTTCAGgtgattttttcgtctcatgc---tgacttagcctaaaagtagag----ttagtaaaaagatcctgactctatcattacccgtttgtatcgaactctcaaatgcag
 || || ||||||||||| || || || ||  |     | |      | |      |   ||||||| | ||||||||||||||||| |||||||||||||| | | |||  | || | |   | |  |   || | |  ||||     | |||| |  ||  ||| |     || |    | | |||   |     | ||  | 
CCAGATTAGTTTCTCAACTGTCAGGGACAAACTTTTGTCCAGGGTGGATTTTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAGgtaaatgttttatttcgttcgtgtaaaatgatctcagaccagaggcttcttgtaatacaata-tgattgatctataatatatatatat---atatatatatata-

upper sequence: AT1G28240.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA07G31680.1 (Glycine max), 5'ss of exon 8
TCAAATCAGTTTCTCAACAGTAAGAGATAAGATCGCAGCAAAAACAAACTGGACAGTAAGCATGTTCCTTGATTGTGAAAGACGCAATTTTGTAGTTCAGgtgattttttcgtctcatg-ctgacttagcctaaaagtagagttagtaaaaagatcctgactctatcattacccgtttgtatcgaactctcaaatgcag---
 || || ||||||||||| || || || || ||     | |    | | |      | | ||||||| | ||||||||||||||||| |||||||||||||| | | ||| | |   |  ||   |  | |||||| |  |  | | |   |  ||| ||   ||  |   |   ||   | |  ||    | ||  ||   
CCAGATTAGTTTCTCAACCGTTAGGGACAAAATTTTGTCGAGGGTAGATTTTCATTTTAACATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAGgtaactatttagacatgtttctatatctgactaaaactttatattgcattgatttccagaaggtacaa--gctgattctgaacagacaaaaacatttagtaa

upper sequence: AT1G28240.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA15G08090.1 (Glycine max), 5'ss of exon 8
TCAAATCAGTTTCTCAACAGTAAGAGATAAGATCGCAGCAAAAACAAACTGGACAGTAAGCATGTTCCTTGATTGTGAAAGACGCAATTTTGTAGTTCAGgtgattttttcgtctcatgc---tgacttagcctaaaagtagag--ttagtaaaaagatcctgactctatcattacccgtttgtatcgaactctcaaatgcag
 || || ||||||||||| || || |||||  |     | |      | |      |   ||||||| | ||||||||||||||||| |||||||||||||| | | |||  | || |     | |  |   || | |  ||||  ||  |    |  | ||  ||  || |  |  |  |   |  ||  | | | || || 
CCAGATTAGTTTCTCAACTGTCAGGGATAAACTTTTGTCCAGGGTGGATTTTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAGgtaaatattttatttcgtttgtgtaaaatgatctcacaccagaggcttcttgtttaatttctagcttcat-acaatacaatataactgatttgtaacat-ca-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116429469|gb|EG472061.1|EG472061
EST:     GGACAGTAAGCATGTTCCTTGATTGTGAAAGACGCAATTTTGTAGTTCAG                         AGATATCACCGAGCAGAACAAGAAAGATTTGCAAGGCAACGACCTCCGGTG
genomic: GGACAGTAAGCATGTTCCTTGATTGTGAAAGACGCAATTTTGTAGTTCAGgtgatttttt ... tcaaatgcagAGATATCACCGAGCAGAACAAGAAAGATTTGCAAGGCAACGACCTCCGGTG
EST: gi|124823862|gb|EH908728.1|EH908728
EST:     CCTTGATTGTGAAAGACGCAATTTTGTAGTTCAG                         AGATATCACCGAGCAGAACAAGAAAGATTTGCAAGGCAACGACCTCCGGTG
genomic: CCTTGATTGTGAAAGACGCAATTTTGTAGTTCAGgtgatttttt ... tcaaatgcagAGATATCACCGAGCAGAACAAGAAAGATTTGCAAGGCAACGACCTCCGGTG
EST: gi|125009453|gb|EL081722.1|EL081722
EST:     TTCCTTGATTGTGAAAGACGCAATTTTGTAGTTCAG                         AGATATCACCGAGCAGAACAAGAAAGATTTGCAAGGCAACGACCTCCGGTG
genomic: TTCCTTGATTGTGAAAGACGCAATTTTGTAGTTCAGgtgatttttt ... tcaaatgcagAGATATCACCGAGCAGAACAAGAAAGATTTGCAAGGCAACGACCTCCGGTG