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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAATGCAGCAACTTCGTGATAAGCTCGCCATAACAGACCGGGCTGCAAAATCCGAGGCACAGTTAAAAgtaacaaatcttatccattagtcagcttctttcagttgatcttgttacacagaacaagaagtaatatattttgtttgtgcaatttcag

Basic information

species Arabidopsis thaliana
transcript AT1G24764.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G24764.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA02G09390.1 (Glycine max), 5'ss of exon 8
GGAGAAATGCAGCAACTTCGTGATAAGCTCGCCATAACAGACCGGGCTGCAAAATCCGAGGCACAGTTAAAAgtaacaaatcttatccattagtcagcttctttcagttgatcttgttacacagaacaagaagtaatatattttgtttgtgcaatttcag
||||||||||||||||||||||| ||||| || |||   || || ||||||||||  || |||||||| ||||||| || |||  | | |||   |  ||   | || ||||    |  | ||  |      || |  | ||    || | ||       
GGAGAAATGCAGCAACTTCGTGACAAGCTTGCTATAGTTGAGCGCGCTGCAAAATATGAAGCACAGTTGAAAgtaataa-tctggttc-ttatcta--ttgacttaggtgattagttctcccattattcatggtgaacttttaaaatttttcag------

upper sequence: AT1G24764.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA08G05100.1 (Glycine max), 5'ss of exon 8
GGAGAAATGCAGCAACTTCGTGATAAGCTCGCCATAACAGACCGGGCTGCAAAATCCGAGGCACAGTTAAAAgtaacaaatcttatccattagtcagcttctttcagttgatcttgttacacagaacaagaagtaatatattttgtttgtgcaatttcag
||||| |||||||||||||| || ||||| || ||||| || ||  ||||||| || || |||||||||||||||| || |||      | || |  | | | | || | |     ||||      ||  |   ||  ||     |||    | ||||||
GGAGAGATGCAGCAACTTCGGGACAAGCTTGCTATAACTGAGCGAACTGCAAAGTCTGAAGCACAGTTAAAAgtaataa-tctgggttttcagcccccatgtattagcttaggg-attacttctgccattactcaaggtaaaccttttaca-attttcag

upper sequence: AT1G24764.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA07G26540.1 (Glycine max), 5'ss of exon 8
GGAGAAATGCAGCAACTTCGTGATAAGCTCGCCATAACAGACCGGGCTGCAAAATCCGAGGCACAGTTAAAAgtaacaaatcttatccattagtcagcttctttcagttgatcttgttacacagaacaagaagtaatatattttgtttgtgcaatttcag
||||||||||||||||||||||| ||||| || |||   || || |||||||| || || ||||| || ||||||| || |||  | | |||   |  ||   | || ||||    |  | ||  |    | || |  | ||   | | | ||       
GGAGAAATGCAGCAACTTCGTGACAAGCTTGCTATAGTTGAGCGCGCTGCAAAGTCTGAAGCACAATTGAAAgtaataa-tctggttc-ttatcta--ttgacttaggtgattagttctcccattattcaaggtgaacttttaaatattttcag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163994904|gb|ES155870.1|ES155870
EST:     ATAAGCTCGCCATAACAGACCGGGCTGCAAAATCCGAGGCACAGTTAAAA                         GAGAAGTTTCAACTGCGGCTTAAAGTGCTTGAGGA
genomic: ATAAGCTCGCCATAACAGACCGGGCTGCAAAATCCGAGGCACAGTTAAAAgtaacaaatc ... gcaatttcagGAGAAGTTTCAACTGCGGCTTAAAGTGCTTGAGGA