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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAAGTTCTGTTATAACGAGAAACTGGTTCTTCTGGGAGACGAGGTTTATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttctatatttggtttcatgtgtctaaccttgtgcctgatttgtgatctctcttttgatacgaccattcttaaaaaatcatag

Basic information

species Arabidopsis thaliana
transcript AT1G23310.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124722577|gb|EH813979.1|EH813979
EST:     CAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
genomic: CAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
EST: gi|124711979|gb|EH803381.1|EH803381
EST:     CAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
genomic: CAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
EST: gi|124907335|gb|EH981415.1|EH981415
EST:     ATCAGCAGAACATATACCAGGATGAGTGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGG
genomic: ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGG
EST: gi|125293359|gb|EL307444.1|EL307444
EST:     ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAG
genomic: ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAG
EST: gi|125066645|gb|EL133449.1|EL133449
EST:     TACCAGGATTGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTAT
genomic: TACCAGGA-TGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTAT
EST: gi|124945653|gb|EL021641.1|EL021641
EST:     ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTT
genomic: ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTT
EST: gi|125304830|gb|EL318915.1|EL318915
EST:     ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGG
genomic: ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGG
EST: gi|125266147|gb|EL280232.1|EL280232
EST:     ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAG
genomic: ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAG
EST: gi|125290841|gb|EL304926.1|EL304926
EST:     AGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
genomic: AGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
EST: gi|301502125|gb|HO207665.1|HO207665
EST:     ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
genomic: ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
EST: gi|125082250|gb|EL143189.1|EL143189
EST:     ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAG
genomic: ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAG
EST: gi|86074135|gb|DR369892.1|DR369892
EST:     ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
genomic: ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
EST: gi|116434562|gb|EG477154.1|EG477154
EST:     ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
genomic: ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
EST: gi|124999979|gb|EL072248.1|EL072248
EST:     CAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
genomic: CAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
EST: gi|116482910|gb|EG525502.1|EG525502
EST:     ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
genomic: ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
EST: gi|125063217|gb|EL131276.1|EL131276
EST:     TATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTT
genomic: TATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTT
EST: gi|86074134|gb|DR369891.1|DR369891
EST:     ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
genomic: ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
EST: gi|124750663|gb|EH840793.1|EH840793
EST:     ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCC
genomic: ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCC
EST: gi|125322079|gb|EL336164.1|EL336164
EST:     GATGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAG
genomic: GATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAG
EST: gi|125022910|gb|EL095179.1|EL095179
EST:     ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAG
genomic: ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAG
EST: gi|86074114|gb|DR369871.1|DR369871
EST:     ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
genomic: ATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
EST: gi|125093797|gb|EL151336.1|EL151336
EST:     AGCGTCCCTTTATCAGCTCCAAGAAG                         GTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT
genomic: AGCGTCCCTTTATCAGCTCCAAGAAGgttagcttct ... aaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGAAGTTCTGTTATAACGAGAAACTGGTTCTTCTGGGAGACGAGGTTTATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGgttagcttctatatttggtttcatgtgtctaaccttgtgcctgatttgtgatctctcttttgatacgaccattcttaaaaaatcatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG