Sequence
atgc intronic sequence ATGC exonic sequenceGTTAGGGACGCAGGGAATCTGTTGACCAGGGCGGGTTTTAGTCTTCCTGGTGTTGATGTTGATGAATATGTAGTTAAATACAAGAGAGgtaaactgttccacttttttcctacttcatcgtttgcaacaacgtgtatcttccaagaattatttctgatttgccttctcgtttatatctttctactcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G22800.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G22800.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA12G37130.2 (Glycine max), 5'ss of exon 8
GTTAGGGACGCAGGGAATCTGTTGACCAGGGCGGGTTTTAGTCTTCCTGGTGTTGATGTTGATGAATATGTAGTTAAATACAAGAGAGgtaaactgttccacttt-tttcctacttcatcgtttgcaacaacgtg---tatcttccaagaattatt--tctgatttgccttctcgtttatatctttctactcag
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GTTCGAGATGCTGGGAATCTTTTGACTAGGGCAGGTTTCACCCTTCCAGGTGTTGATGTTGATGATTATGTAGTTAAATATGAAAGTGgtgagaaatttcatttgatttaataattgaattattccacgtgcgtgacatgaattaaatgaattatgagtgcgtcctaaattttttgctacatatattc------
upper sequence: AT1G22800.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA04G43650.1 (Glycine max), 5'ss of exon 7
GTTAGGGACGCAGGGAATCTGTTGACCAGGGCGGGTTTTAGTCTTCCTGGTGTTGATGTTGATGAATATGTAGTTAAATACAAGAGAGgtaaactgttccacttt-tttcctacttcatcgtttgcaacaacgtg---tatcttccaagaattatt--tctgatttgccttctcgtttatatctttctactcag
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GTTCGAGATGCTGGGAATCTTTTGACTAGGGCAGGTTTCACCCTTCCAGGGGTTGATGTTGATGAGTATGTAGTTAAATATGAAAGTGgtgagaaatttcatttgatttaataattgaattattccacgtgcgtgacatgaattaaatgaattatgagtgcgtcctaaattttttgctacatatattc------
upper sequence: AT1G22800.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA04G43530.1 (Glycine max), 5'ss of exon 5
GTTAGGGACGCAGGGAATCTGTTGACCAGGGCGGGTTTTAGTCTTCCTGGTGTTGATGTTGATGAATATGTAGTTAAATACAAGAGAGgtaaactgttccacttt-tttcctacttcatcgtttgca---acaacgtgtatcttccaagaattat---ttctgatttgccttctcgtttatatctttctactcag
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-----------------------------GGCAGGTTTCACCCTTCCAGGTGTTGATGTTGATGAGTATGTAGTTAAATATGAAAGCgttgagaaatttcatttggtttaataattgaattattccacatgcatgacatgaattaaatgaattatgagtgctccctaaatttttgctacaagtttggaatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86084200|gb|DR379959.1|DR379959EST: TGATGTTGATGAATATGTAGTTAAATACAAGAGAG CGATGGATCTTATAGAGCATCTTCGTGCGATGGGTGAAACCAATGCTCTTC
genomic: TGATGTTGATGAATATGTAGTTAAATACAAGAGAGgtaaactgtt ... ttctactcagCGATGGATCTTATAGAGCATCTTCGTGCGATGGGTGAAACCAATGCTCTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTAGGGACGCAGGGAATCTGTTGACCAGGGCGGGTTTTAGTCTTCCTGGTGTTGATGTTGATGAATATGTAGTTAAATACAAGAGAGgtaaactgttccacttttttcctacttcatcgtttgcaacaacgtgtatcttccaagaattatttctgatttgccttctcgtttatatctttctactcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA