1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGTATCTAGCTTATAGTGATGGAATGAGAGTCATCGATTCCGGAAAGCTATCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCGgtaacgcttgtgaatttagtcatctgaaaccctttgctggcgaatttgaaaattacaaaacttaaaaacattatgttttccttgtgtag
species | Arabidopsis thaliana |
transcript | AT1G19660.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAAAGCTAAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCG GCCAAATGGTCAGCCTTGTTTTGATACAAAAGAGTTCGAEST: gi|116471465|gb|EG514057.1|EG514057
genomic: CAAAGC-AAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCGgtaacgcttg ... ccttgtgtagGCCAAATGGTCAGCCTTGTTTTGATACAAAAGAGTTCGA
EST: TCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCG GCCAAATGATCAGEST: gi|86081874|gb|DR377633.1|DR377633
genomic: TCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCGgtaacgcttg ... ccttgtgtagGCCAAATGGTCAG
EST: TCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCG GCCAAATGGTCAGCCTTGTTTTGATACAAAAGAGTTCGATCTAGTAAGGAAEST: gi|164106340|gb|ES111624.1|ES111624
genomic: TCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCGgtaacgcttg ... ccttgtgtagGCCAAATGGTCAGCCTTGTTTTGATACAAAAGAGTTCGATCTAGTAAGGAA
EST: TCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCG GCCAAATGGTCAGCCTTGTTTTGATACAAA-GAGTTCGATCTAGTEST: gi|86080886|gb|DR376643.1|DR376643
genomic: TCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCGgtaacgcttg ... ccttgtgtagGCCAAATGGTCAGCCTTGTTTTGATACAAAAGAGTTCGATCTAGT
EST: TCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCG GCCAAATGGTCAGCCTTGTTTTGATACAAAAGAGTTCGATCTAGTAAGGAAEST: gi|86085098|gb|DR380857.1|DR380857
genomic: TCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCGgtaacgcttg ... ccttgtgtagGCCAAATGGTCAGCCTTGTTTTGATACAAAAGAGTTCGATCTAGTAAGGAA
EST: TCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCG GCCAAATGGTCAGCCTTGTTTTGATACAAAAGAGTTCGATCTAGTAAGGAAEST: gi|124982765|gb|EL055547.1|EL055547
genomic: TCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCGgtaacgcttg ... ccttgtgtagGCCAAATGGTCAGCCTTGTTTTGATACAAAAGAGTTCGATCTAGTAAGGAA
EST: TGAACTAGACCG GCCAAATGGTCAGCCTTGTTTTGATACAAAAGAGTTCGATCTAGTAAGGAAEST: gi|152034732|gb|BP835572.2|BP835572
genomic: TGAACTAGACCGgtaacgcttg ... ccttgtgtagGCCAAATGGTCAGCCTTGTTTTGATACAAAAGAGTTCGATCTAGTAAGGAA
EST: TCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCG GCCAAATGGTCAGCCTTGTTTTGATACAAAAGAGTTCGATCTAGTAAGGAAEST: gi|164231153|gb|ES038569.1|ES038569
genomic: TCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCGgtaacgcttg ... ccttgtgtagGCCAAATGGTCAGCCTTGTTTTGATACAAAAGAGTTCGATCTAGTAAGGAA
EST: TCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCG GCCAAATGGTCAGCCTTGTTTTGATACAAAAGAGTTCGATCTAGT
genomic: TCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCGgtaacgcttg ... ccttgtgtagGCCAAATGGTCAGCCTTGTTTTGATACAAAAGAGTTCGATCTAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTATCTAGCTTATAGTGATGGAATGAGAGTCATCGATTCCGGAAAGCTATCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAACTAGACCGgtaacgcttgtgaatttagtcatctgaaaccctttgctggcgaatttgaaaattacaaaacttaaaaacattatgttttccttgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA