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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAAGGAAGGAGACGGTGCATTTTATGGCCCAAAGATAGACATAACAGTGTCTGATGCCAGGAATAGGAAATTCCAGTGTGCTACTATACAGgttaggctcccaaactctttttagttttttcctctgttttttgttcttgatctcttacaataagattttgatccttatttgcttcgtaccag

Basic information

species Arabidopsis thaliana
transcript AT1G17960.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G17960.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA01G03930.1 (Glycine max), 5'ss of exon 15
ATAAAGGAAGGAGACGGTGCATTTTATGGCCCAAAGATAGACATAACAGTGTCTGATGCCAGGAATAGGAAATTCCAGTGTGCTACTATACAGgttag-gctcccaaactctttttagttttttcctctgttttttgttcttgatctcttacaataagattttgatccttatttgcttcgtaccag
 | || ||||| || |||||||| || || |||||||||||||| |  || ||||||||   || |||||||||||||||||| ||| | |||||| |  |     | ||   |||   |  |||   || ||   ||| |  ||  |||   |   |||  |       || || ||  |  |||
TTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcacctttcagctggattt---tcattcacatgattca-gttttgaataacttttcagctgatggttggatgaatgtggttgcttgcag

upper sequence: AT1G17960.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA02G03750.1 (Glycine max), 5'ss of exon 15
ATAAAGGAAGGAGACGGTGCATTTTATGGCCCAAAGATAGACATAACAGTGTCTGATGCCAGGAATAGGAAATTCCAGTGTGCTACTATACAGgttag-gctcccaaactctttttagttttttcctctgttttttgttcttgatctcttacaataagattttgatccttatttgcttcgtaccag
 | || ||||| || |||||||| ||||| |||||||||||||| |  || ||||||||   |  |||||||||||||||||| ||| | |||||| |  ||    | ||   |||   ||    | ||   ||  ||| |  ||  |||   |   |||  |       || || ||     |||
TTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGACATCAGTGTATCTGATGCATTGGGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcactgttcagctagatttgcatt----cacttgattcagttttgaataacttttcagctgatggttggatgaatctggttgcctgcag

upper sequence: AT1G17960.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv01s0026g00340.t01 (Vitis vinifera), 5'ss of exon 16
ATAAAGGAAGGAGACGGTGCATTTTATGGCCCAAAGATAGACATAACAGTGTCTGATGCCAGGAATAGGAAATTCCAGTGTGCTACTATACAGgtt----aggctcccaaactctttttagttttttcctctgtttt-----ttgttcttgatctcttacaataagattttgatccttatttgcttcgtac-cag
||||| ||||| || ||||| |||||||| |||||||||||||| |  || ||||||||    | |||||||||||||||||| ||  ||||||||    | | || |   ||||| ||  || |||| | || |       |||| |||  |     | ||| || |||| ||  ||   |  |  |    |||
ATAAATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTTTCTGATGCATTAAGTAGGAAATTCCAGTGTGCAACATTACAGgtttatcatgttcacttgctcttgttcattctttcgtgtgctgcaacacttgtgctttcttgtgcagaattaggttttaattgttggataatgtgcttgcag

upper sequence: AT1G17960.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv19s0015g00470.t01 (Vitis vinifera), 5'ss of exon 16
ATAAAGGAAGGAGACGGTGCATTTTATGGCCCAAAGATAGACATAACAGTGTCTGATGCCAGGAATAGGAAATTCCAGTGTGCTACTATACAGgttaggctcccaaactc---tttttagttttttcctctgtt-----ttttgttcttgatctcttacaataagattttgatccttatttgct-tcgtaccag
||||| ||||| ||||||||||||||||| |||||||| ||||| |  || ||||||||    |||||||||||||||||||| ||  ||||||||   |     ||||    |||||  || |||  | || |     |||||| |||  |       ||| || |||| ||   |   |  | | ||  |||
ATAAATGAAGGGGACGGTGCATTTTATGGACCAAAGATTGACATTAGTGTTTCTGATGCATTAAATAGGAAATTCCAGTGTGCAACATTACAGgtttatcatgttaacttgctttttttattctttagtgtgctgctacttttgtactttttggtgcggaattaggttttaattagtggataatgtggttgcag