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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCCCAGACTGCAATAGATGAGATAACTGgtgagtgttgcaatttgttttcccccttgatagttgatgttaatattttgttattttagctttgtgtttttgagcttattgtaattggtgggagattctcttctgcttttcag

Basic information

species Arabidopsis thaliana
transcript AT1G17370.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116486725|gb|EG529317.1|EG529317
EST:     GATGCCCAGACTGCAATAGATGAGATAACTG                         GGAAATGGCTTGGTTCCAGGCAGATACGTTGCAACTGGGCGACAAAGGGAG
genomic: GATGCCCAGACTGCAATAGATGAGATAACTGgtgagtgttg ... tgcttttcagGGAAATGGCTTGGTTCCAGGCAGATACGTTGCAACTGGGCGACAAAGGGAG
EST: gi|116386087|gb|EG428679.1|EG428679
EST:     GATGCCCAGACTGCAATAGATGAGATAACTG                         GGAAATGGCTTGGTTCCAGGCAGATACGTTGCAACTGGGCGACAAAGGGAG
genomic: GATGCCCAGACTGCAATAGATGAGATAACTGgtgagtgttg ... tgcttttcagGGAAATGGCTTGGTTCCAGGCAGATACGTTGCAACTGGGCGACAAAGGGAG
EST: gi|116486731|gb|EG529323.1|EG529323
EST:     GATGCCCAGACTGCAATAGATGAGATAACTG                         GGAAATAGCTTGGTTCCAGGCAGATACGTTGCAACTGGGCGACAAAGGGAG
genomic: GATGCCCAGACTGCAATAGATGAGATAACTGgtgagtgttg ... tgcttttcagGGAAATGGCTTGGTTCCAGGCAGATACGTTGCAACTGGGCGACAAAGGGAG
EST: gi|125032627|gb|EL104896.1|EL104896
EST:     GATGCCCAGACTGCAATAGATGAGATAACTG                         GGAAATGGCTTGGTTCCAGGCAG
genomic: GATGCCCAGACTGCAATAGATGAGATAACTGgtgagtgttg ... tgcttttcagGGAAATGGCTTGGTTCCAGGCAG
EST: gi|125278859|gb|EL292944.1|EL292944
EST:     GATGCCCAGACTGCAATAGATGAGATAACTG                         GGAAATGGCTTGGTTCCAGGCAGATACGTTGCAACTGGGCG
genomic: GATGCCCAGACTGCAATAGATGAGATAACTGgtgagtgttg ... tgcttttcagGGAAATGGCTTGGTTCCAGGCAGATACGTTGCAACTGGGCG
EST: gi|116486728|gb|EG529320.1|EG529320
EST:     GATGCCCAGACTGCAATAGATGAGATAACTG                         GGAAATGGCTTGGTTCCAGGCAGATACGTTGCAACTGGGCGACAAAGGGAG
genomic: GATGCCCAGACTGCAATAGATGAGATAACTGgtgagtgttg ... tgcttttcagGGAAATGGCTTGGTTCCAGGCAGATACGTTGCAACTGGGCGACAAAGGGAG
EST: gi|116386137|gb|EG428729.1|EG428729
EST:     GATGCCCAGACTGCAATAGATGAGATAACTG                         GGAAATGGCTTGGTTCCAGGCAGATACGTTGCAACTGGGCGACAAAGGGAG
genomic: GATGCCCAGACTGCAATAGATGAGATAACTGgtgagtgttg ... tgcttttcagGGAAATGGCTTGGTTCCAGGCAGATACGTTGCAACTGGGCGACAAAGGGAG
EST: gi|116477129|gb|EG519721.1|EG519721
EST:     GATGCCCAGACTGCAATAGATGAGATAACTG                         GGAAATGGGCTTGGTTCCAGGCAGATACGTTGCAACTGGGCGACAAAGGGA
genomic: GATGCCCAGACTGCAATAGATGAGATAACTGgtgagtgttg ... tgcttttcagGGAAATGG-CTTGGTTCCAGGCAGATACGTTGCAACTGGGCGACAAAGGGA
EST: gi|125175853|gb|EL195594.1|EL195594
EST:     ATGCCCAGACTGCAATAGATGAGATAACTG                         GGAAATGGCTTGGTTCCAGGCAGATACGTTGCAACTGGGCGACAAAGGGAG
genomic: ATGCCCAGACTGCAATAGATGAGATAACTGgtgagtgttg ... tgcttttcagGGAAATGGCTTGGTTCCAGGCAGATACGTTGCAACTGGGCGACAAAGGGAG