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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTGTTGCAAGTGGAGCAACCAGAGCAGCTCTAACACAGCACTTTGCTCTTCAAGACAATGCAGCGGATATATCTGCTAAGgtactctttacttcttgtcactgtgaatgatatagaaactataaatgtgaactttgagtaattctttgcttctattttatctattgaaag

Basic information

species Arabidopsis thaliana
transcript AT1G13770.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13770.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os03g11500.1 (Oryza sativa), 5'ss of exon 9
CTGGTGTTGCAAGTGGAGCAACCAGAGCAGCTCTAACACAGCACTTTGCTCTTCAAGACAATGCAGCGGATATATCTGCTAAGgta-ctctttact-tcttgt--cactgtgaatgatatagaaactataaatgtgaactttgagtaattctttgcttctattttatctattgaaag
|||||||||| ||||||||||| ||||||||  |||| ||||| ||||| |||    | |||||||| ||||||||||| |||||| || |  | | ||||||  ||   | ||||  |   | |   ||||| |         |||  |         || |  |  | |      
CTGGTGTTGCTAGTGGAGCAACTAGAGCAGCGTTAACCCAGCATTTTGCACTTGCCAATAATGCAGCTGATATATCTGCAAAGgtaactttgcattatcttgtaacatcctaaatgccaattagatggtaaatttctctaaactgtagctgcagaagcatactcaacttttcag---

upper sequence: AT1G13770.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM5G846548_T01 (Zea mays), 5'ss of exon 9
CTGGTGTTGCAAGTGGAGCAACCAGAGCAGCTCTAACACAGCACTTTGCTCTTCAAGACAATGCAGCGGATATATCTGCTAAGgtactctttacttcttgtcactgtgaatgatatagaaactataaatgtgaactttgagtaatt----ctttgcttctat-tttatctattgaaag
|||||||||| ||||||||||| |||||||| ||||| ||||| ||||| |||  | | |||||||| ||||| ||||| ||||||  ||       |  |||     |||    |     || |   | | |  ||| |  || |     |   |    ||  | | || || |   
CTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCACTTGCAAATAATGCAGCTGATATTTCTGCAAAGgtaagctagggcattcttcag---aaatttgctgatcccttttggtattatttttaaaaaaatgaagttgcacaagcatactcaacttttcag--

upper sequence: AT1G13770.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA02G13010.1 (Glycine max), 5'ss of exon 5
CTGGTGTTGCAAGTGGAGCAACCAGAGCAGCTCTAACACAGCACTTTGCTCTTCAAGACAATGCAGCGGATATATCTGCTAAGgtactctttacttcttgtcactgtgaatgatatagaaactataaatgtgaa-ctttgagtaattctttgcttctattttatctattgaaag--------------------------------------
||||||||||||||||||| || ||||||||| | || ||||| ||||||||||| || ||||| || ||||||||||| ||||| |   |||| | |  ||    ||  |     |  | ||   | |   |  |||| |  | || |    || | || ||| |||  | |                                       
CTGGTGTTGCAAGTGGAGCCACTAGAGCAGCTTTGACTCAGCATTTTGCTCTTCAGGATAATGCTGCAGATATATCTGCAAAGgttcaagttacatttattctaactgtttagatcattatctgagagttaaagtctttaatgagttgtgcattttttttatatgtatgtatattttgacttattaacatatatatatatatatatatatag

upper sequence: AT1G13770.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA01G07190.2 (Glycine max), 5'ss of exon 9
CTGGTGTTGCAAGTGGAGCAACCAGAGCAGCTCTAACACAGCACTTTGCTCTTCAAGACAATGCAGCGGATATATCTGCTAAGgtactctttac--ttcttgtcactgtga----atgatatagaaacta---taaatgtgaactttga-gtaattctttgcttctattttatctattgaaag
|||||||||||||||| || || ||||||||| | || ||||| ||||||||||| || ||||| || ||||||||||| ||||| ||  ||||  || ||   ||||| |    || || |   |  ||   |  || |  | || |   ||  | ||||  |   |  | | |||  | ||
CTGGTGTTGCAAGTGGTGCCACTAGAGCAGCTTTGACTCAGCATTTTGCTCTTCAGGATAATGCTGCAGATATATCTGCAAAGgttctagttacagttattccaactgttagatcattatttgagagttaatgtctatattcagttgggcatatatatttgacttattaatgtatatctatag

upper sequence: AT1G13770.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv01s0011g00500.t01 (Vitis vinifera), 5'ss of exon 9
CTGGTGTTGCAAGTGGAGCAACCAGAGCAGCTCTAACACAGCACTTTGCTCTTCAAGACAATGCAGCGGATATATCTGCTAAGgtac---tctttac-ttcttgtcactgtgaatgatatagaaact-ataaatgtgaactttgagtaattctttgcttctattttatctattgaaag
|||||||||||||||||||||| ||||| ||  | ||||| || |||||||||||| | ||||| || ||||||||||| |||||     | |   | |||| | |    || |   |||| ||||| || | |  | |  | |  | |  | |    | | ||||||   |||| ||
CTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAGgtgtgagtataagcattctgggctggatggaaactatacaaacttatgattaagtaactagtttcaaccatcaact-tgttttatactttgacag