Sequence
atgc intronic sequence ATGC exonic sequenceGAATGCTAATGGACCTTCTTTCTCCTTTGTTTCCATCTGCCTTTATCGTTGTGGTTTGCTTAGGGAGCCTATCAAGATCATTTAgtgcgtatcatttcttgcatcaaacattgaagttaagacttcggtttggattgatacatcggtttttaacttttttcaatcttggctattag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G13770.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G13770.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA01G07190.2 (Glycine max), 5'ss of exon 8
GAATGCTAATGGACCTTCTTTCTCCTTTGTTTCCATCTGCCTTTATCGTTGTGGTTTGCTTAGGGAGCCTATCAAGATCATTTAgtgcgtatca---tttcttgcatcaaacattgaa--gttaagac--ttcggtttggattgata--catcggtttttaacttttttcaatcttggctattag
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GAATGCTAATGGACCTCATTTCTCCATTGTTTCCATCAGCTTTTGTATTTGTTGTTTGCTTAGGAAGCATATCAAGATCTTTCAgtaagttccaatattgctggaagtttaaattaaatgactgatgtgattcaaagctaattgctagctgtaggttatttcctcttctttttccatgtaagaa-
upper sequence: AT1G13770.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA02G13010.1 (Glycine max), 5'ss of exon 4
GAATGCTAATGGACCTTCTTTCTCCTTTGTTTCCATCTGCCTTTATCGTTGTGGTTTGCTTAGGGAGCCTATCAAGATCATTTAgtgcgtatcatttcttgcatcaaacattgaagttaag-----acttcggtttggattgatacatcggtttttaacttttttcaatcttggctattag-----
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GAATGTTAATGGACCTCATTTCTCCGTTGTTTCCATCAGCTTTTGTATTTGTTGTTTGCTTAGGAAGCATATCAAGATCTTTCAgtaagttccaata-ttgcaggaagt-ttaaaattaaatgactaatgtgatttaaagttagttgctagctgtaggttttttcctcttctttttccatgtaaga
upper sequence: AT1G13770.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv01s0011g00500.t01 (Vitis vinifera), 5'ss of exon 8
GAATGCTAATGGACCTTCTTTCTCCTTTGTTTCCATCTGCCTTTATCGTTGTGGTTTGCTTAGGGAGCCTATCAAGATCATTTAgtgcgtatcattt--cttgcatcaaacattgaagttaagacttcggtttggattgat-----acatcggtttttaacttttttcaatcttggctattag-
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GGATGTTAATGGATCTTGTTTCTCCTTTGTTCCCTTCAGCATTTGTGTTCATAGTTTGCTTAGGGAGCCTATCAAGATCGTTCAgtaagtttttgtatactccaattcattgttacaaaatgaaaagctgttaagatctattgggaactgctactttctgacttttattgccctaactcacaccMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19876024|gb|AU236855.1|AU236855EST: ATCTGCCTTTATCGTTGTGGTTTGCTTAGGGAGCCTATCAAGATCATTTA CTGGTGTTGCAAGTGGAGCAACCAGAGCAGCTCTAACACAGCACTTTGCTC
genomic: ATCTGCCTTTATCGTTGTGGTTTGCTTAGGGAGCCTATCAAGATCATTTAgtgcgtatca ... tggctattagCTGGTGTTGCAAGTGGAGCAACCAGAGCAGCTCTAACACAGCACTTTGCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATGCTAATGGACCTTCTTTCTCCTTTGTTTCCATCTGCCTTTATCGTTGTGGTTTGCTTAGGGAGCCTATCAAGATCATTTAgtgcgtatcatttcttgcatcaaacattgaagttaagacttcggtttggattgatacatcggtttttaacttttttcaatcttggctattag
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