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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTTCACCAACACACTTATTCTTCCGGTTATCAATGGGCCTACAGAGGGGCTTGCACTTATATTTGTCAGCCACTTCTTCACAGCCATCGTCGgtatgcttctctcttgtctgcaatccatgaaaacttcaccctatttaaagtgcttggacaatctttctatacttgggtttggtctttacttcaactctatctttcttctttttttttttctgtctaaag

Basic information

species Arabidopsis thaliana
transcript AT1G13560.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13560.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA02G14210.1 (Glycine max), 5'ss of exon 9
CTATTTCACCAACACACTTATTCTTCCGGTTATCAATGGGCCTACAGAGGGGCTTGCACTTATATTTGTCAGCCACTTCTTCACAGCCATCGTCGgtatg--cttctctcttgtctgca-atccatgaaaacttcaccctatttaaagtgcttggacaatctttctatacttgggtttggtctttacttcaactctatctttcttctttttttttttctgtctaaag
|||||||||||| |||||||| || || ||||| ||||||||||||||||| |||    | ||||   || | ||||| ||||| || ||||| ||||||  |||   |  ||| |  | |  ||     |||      | ||  ||   | || |   | ||  |||  ||        |  ||| |   | | ||                              
CTATTTCACCAATACACTTATACTGCCTGTTATAAATGGGCCTACAGAGGGTCTTATGATAATATACATCTGTCACTTTTTCACTGCTATCGTGGgtatggactttctttgtgtttatacacacacagctactaatttttcttagaatcccatgtatgttgttgttattgtta-------ttattattatgattatacag---------------------------

upper sequence: AT1G13560.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA12G08720.1 (Glycine max), 5'ss of exon 9
CTATTTCACCAACACACTTATTCTTCCGGTTATCAATGGGCCTACAGAGGGGCTTGCACTTATATTTGTCAGCCACTTCTTCACAGCCATCGTCGgtatgcttctctcttgtctgcaatccatgaaaacttc--accctatttaaagtgct-tggacaatctttctatacttgggtttggtctt-tacttcaactctatctttcttctttttttttttctgtctaaag
 ||||||||||| |||||||| || || ||||| ||||||||||||||||| |||    | ||||   || | ||||| ||||| || ||||| ||||||    |    ||| |  |  |   || | || |  |   |  ||| | | |  || | | | ||  |||  ||    ||  | || || | ||                                    
TTATTTCACCAATACACTTATACTGCCTGTTATAAATGGGCCTACAGAGGGTCTTATGATAATATACATCTGTCACTTTTTCACTGCTATCGTGGgtatggactttctatgtatttatacacagacagctactaagtttgcttagaatccaatgtatattgttgttattgttattattattattataatgcag-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86070081|gb|DR365838.1|DR365838
EST:     AGAGGGGCTTGCACTTATATTTGTCAGCCACTTCTTCACAGCCATCGTCG                         GTGCTGAATGGTGGGCTCAGCAGTTAGGGCAGTCAATACCATTGTTTAGTT
genomic: AGAGGGGCTTGCACTTATATTTGTCAGCCACTTCTTCACAGCCATCGTCGgtatgcttct ... ctgtctaaagGTGCTGAATGGTGGGCTCAGCAGTTAGGGCAGTCAATACCATTGTTTAGTT