Sequence
atgc intronic sequence ATGC exonic sequenceATCTGGTGTTAGAGTGTATGCAACGCAGTTATTCATATCCCTTAAACATCTCAAGAACTGTGGGGTTCTTCACTGCGATATAAAGCCTGACAACATGCTGgtaagctatacttgtctgtgtttttctcctgcttgatgcacataaattttaacttctggtcgttccttgattatccag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G13350.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G13350.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: EFJ38506 (Selaginella moellendorffii), 5'ss of exon 7
ATCTGGTGTTAGAGTGTATGCAACGCAGTTATTCATATCCCTTAAACATCTCAAGAACTGTGGGGTTCTTCACTGCGATATAAAGCCTGACAACATGCTGgtaagc-tatacttgtctgtgtttttctcctgcttgatg-cacataaattttaacttctggtcgttccttgattatccag
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GGCTGCGGTTCGCTCTTATGCCAGGCAACTCTTCACTGCTTTGAAGCATTTGCGAAACTGTGGTGTTTTGCACTGCGATATCAAGCCCGACAATATGCTGgtaagtgtacgtttgcc-gtacata-ctgcgatttaacggcttattgactttacag------------------------
upper sequence: AT1G13350.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: EFJ31639 (Selaginella moellendorffii), 5'ss of exon 7
ATCTGGTGTTAGAGTGTATGCAACGCAGTTATTCATATCCCTTAAACATCTCAAGAACTGTGGGGTTCTTCACTGCGATATAAAGCCTGACAACATGCTGgtaagctatacttgtctgtgtttttctcctgcttgatgcacataaattttaacttctggtcgttccttgattatccag
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GGCTGCGGTTCGCTCTTATGCCAGGCAACTCTTCACTGCTTTGAAGCATTTGCGAAACTGTGGTGTTTTGCACTGCGATATCAAGCCCGACAATATGCTGgtaagtcctcgtttgctgtacata-ctgcgatttaacggccttgactttacag-------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164079105|gb|EL982965.1|EL982965EST: TCAAGAACTGTGGGGTTCTTCACTGCGATATAAAGCCTGACAACATGCTG GTGAATGAGGGAAGAAACACGTTAAAGCTTTGTGACTTTGGTA
genomic: TCAAGAACTGTGGGGTTCTTCACTGCGATATAAAGCCTGACAACATGCTGgtaagctata ... gattatccagGTGAATGAGGGAAGAAACACGTTAAAGCTTTGTGACTTTGGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCTGGTGTTAGAGTGTATGCAACGCAGTTATTCATATCCCTTAAACATCTCAAGAACTGTGGGGTTCTTCACTGCGATATAAAGCCTGACAACATGCTGgtaagctatacttgtctgtgtttttctcctgcttgatgcacataaattttaacttctggtcgttccttgattatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG