1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGCACAAGAGACTCGTAAACAAGAGCTAGCAAAGTTGGTTCAGGATCAGGAAAGTTTGAGAAGCTCTCTTTTGCAGTGGTGCTACACCAGTTATGGAGAGgtaggtatctacacattgctctgaatagatattctcttgtaatacaatacctgaatctgttttgatcttcggtctacatctgtag
species | Arabidopsis thaliana |
transcript | AT1G12840.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAAGTTTGAGAAGCTCTCTTTTGCAGT-GTGCTACACCAGTTATGGAGAG GTTTTCAGCTCCTGGATGCATTTCTGTGCTGTGCGTACATTCGCTGAGAGCEST: gi|125180499|gb|EL197426.1|EL197426
genomic: AAAGTTTGAGAAGCTCTCTTTTGCAGTGGTGCTACACCAGTTATGGAGAGgtaggtatct ... acatctgtagGTTTTCAGCTCCTGGATGCATTTCTGTGCTGTGCGTACATTCGCTGAGAGC
EST: AAAGTTTGAGAAGCTCTCTTTTGCAGTGGTGCTACACCAGTTATGGAGAG GTTTTCAGCTCCTGGATGEST: gi|125232451|gb|EL246536.1|EL246536
genomic: AAAGTTTGAGAAGCTCTCTTTTGCAGTGGTGCTACACCAGTTATGGAGAGgtaggtatct ... acatctgtagGTTTTCAGCTCCTGGATG
EST: TGCTACACCAGTTATGGAGAG GTTTTCAGCTCCTGGATGCATTTCTGTGCTGTGCGTACATTCGCTGAGAGCEST: gi|125183447|gb|EL198401.1|EL198401
genomic: TGCTACACCAGTTATGGAGAGgtaggtatct ... acatctgtagGTTTTCAGCTCCTGGATGCATTTCTGTGCTGTGCGTACATTCGCTGAGAGC
EST: AAAGTTTGAGAAGCTCTCTTTTGCAGTGGTGCTACACCAGTTATGGAGAG GTTTTCAGCTCCTGGATGCEST: gi|116402070|gb|EG444662.1|EG444662
genomic: AAAGTTTGAGAAGCTCTCTTTTGCAGTGGTGCTACACCAGTTATGGAGAGgtaggtatct ... acatctgtagGTTTTCAGCTCCTGGATGC
EST: AAAGTTTGAGAAGCTCTCTTTTGCAGTGGTGCTACACCAGTTATGGAGAG GTTTTCAGCTCCTGGATGCATTTCTGTGCTGTGCGTACATTCGCTGAGAGCEST: gi|125193532|gb|EL208486.1|EL208486
genomic: AAAGTTTGAGAAGCTCTCTTTTGCAGTGGTGCTACACCAGTTATGGAGAGgtaggtatct ... acatctgtagGTTTTCAGCTCCTGGATGCATTTCTGTGCTGTGCGTACATTCGCTGAGAGC
EST: CTACACCAGTTATGGAGAG GTTTTCAGCTCCTGGATGCATTTCTGTGCTGTGCGTACATTCGCTGAGAGCEST: gi|125233568|gb|EL247653.1|EL247653
genomic: CTACACCAGTTATGGAGAGgtaggtatct ... acatctgtagGTTTTCAGCTCCTGGATGCATTTCTGTGCTGTGCGTACATTCGCTGAGAGC
EST: AGTTATGGAGAG G-TTTCAGCTCCTGGATGCATTTCTGTGCTGTGCGTACATTCGCTGAGAGCEST: gi|125072573|gb|EL137214.1|EL137214
genomic: AGTTATGGAGAGgtaggtatct ... acatctgtagGTTTTCAGCTCCTGGATGCATTTCTGTGCTGTGCGTACATTCGCTGAGAGC
EST: AAAGTTTGAGAAGCTCTCTTTTGCAGTGGTGCTACACCAGTTATGGAGAG GTTTTCAGCTCCTGGATGCATTTCTGTGCTGTGCGTACATTCG
genomic: AAAGTTTGAGAAGCTCTCTTTTGCAGTGGTGCTACACCAGTTATGGAGAGgtaggtatct ... acatctgtagGTTTTCAGCTCCTGGATGCATTTCTGTGCTGTGCGTACATTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCACAAGAGACTCGTAAACAAGAGCTAGCAAAGTTGGTTCAGGATCAGGAAAGTTTGAGAAGCTCTCTTTTGCAGTGGTGCTACACCAGTTATGGAGAGgtaggtatctacacattgctctgaatagatattctcttgtaatacaatacctgaatctgttttgatcttcggtctacatctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA