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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAGAGGATCTTTTTGGTGATGAGGAAACTTCTCGAAAAGGCGATGCGTGCTTGAATGTGATGGCTTCTCGAATTGCTACAGTCTTTGCTTCGTTGCGGgtaccaatcattattctcacgattaacatgactatattatgcggatgactcttctgaatcattttggacgttacag

Basic information

species Arabidopsis thaliana
transcript AT1G12360.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G12360.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA05G03970.1 (Glycine max), 5'ss of exon 9
TTTAGAGGATCTTTTTGGTGATGAGGAAACTTCTCGAAAAGGCGATGCGTGCTTGAATGTGATGGCTTCTCGAATTGCTACAGTCTTTGCTTCGTTGCGGgtac-caatcattattct-cacgattaacatg---actatattatgcggatgactcttctg-aatcattttggacgttacag--------------------------
||||| ||| || ||||| |||||||| | |  ||| ||||  | ||| || || |||||||||||| |||| ||||||||||| |||||||| ||  | |||   | ||| |    | | |  ||| |||    | || |  ||    || | | ||||  |||  || |  |  ||  |                           
TTTAGTGGAGCTATTTGGGGATGAGGAGAATAATCGTAAAGCTGTTGCATGTTTAAATGTGATGGCTACTCGGATTGCTACAGTTTTTGCTTCATTAAGAgtatgtagtcaatgccttgctcttttatcatagaaattaaaaaattgtaatcaatgttctataattgttctaaa-attgtaatcaatgttctgtaaatgtttctctag

upper sequence: AT1G12360.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv13s0019g05000.t01 (Vitis vinifera), 5'ss of exon 8
TTTAGAGGATCTTTTTGGTGATGAGGAAACTTCTCGAAAAGGCGATGCGTGCTTGAATGTGATGGCTTCTCGAATTGCTACAGTCTTTGCTTCGTTGCGGgtaccaatcattattctcacgattaac-atgactatattatgcggatgactcttctgaatcattttggacg--ttacag
||||||||| |||||||| |||||||| | |||||| | ||| ||||| || ||||||||||||||  | || ||||||||||| ||||| || |||||||||   ||    |   |    |||    ||    ||  |||   |||   |||   | || | | ||  ||  || |||
TTTAGAGGAACTTTTTGGGGATGAGGAGAATTCTCGCAGAGGTGATGCATGTTTGAATGTGATGGCCACCCGTATTGCTACAGTTTTTGCCTCATTGCGGgtatgtatttcaagatttctaattgttgattcacattgtattaagatatttctgaagcataagtgtgttcgaatttcag