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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTAGTTCTGCTCTCAGCGGTAGTTGGTACAGGTGCACAGTTGGCGTTGCTGGTTCTTCTTGTCATATTAATGGCCATCGTGGGAACTCTCTACGTTGGgtatgtattacactattcttttctcttgagaccaattttgtgttgttgttttccctacatgcggttggcttgtatattggattttgctcacctcttattctaattatttcag

Basic information

species Arabidopsis thaliana
transcript AT1G10950.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G10950.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA08G20100.1 (Glycine max), 5'ss of exon 8
GTCTAGTTCTGCTCTCAGCGGTAGTTGGTACAGGTGCACAGTTGGCGTTGCTGGTTCTTCTTGTCATATTAATGGCCATCGTGGGAACTCTCTACGTTGGgtatgtattacactattcttttctcttgagaccaattttgtgttgttgttttccctacatgcggttggcttgtatattggattttgctcacctcttattctaattatttcag
|| | ||| | || ||||| || |||||||||||||| ||| | || |||||||||||||||||||| ||  |||| ||  | || |  || || |||||||| ||   | |   ||    |  | ||  |      |     |  || |||   || |||  ||  |  ||| ||    ||     | |   ||   | |           
GTTTGGTTATTCTTTCAGCTGTTGTTGGTACAGGTGCTCAGCTTGCATTGCTGGTTCTTCTTGTCATCTTGTTGGCTATTATTGGGATGCTGTATGTTGGgtaagt-ccatatccttaaactgacctgtaatattgctctgaataatgcttttgtta-atgaagtgtgactgtctacaaaatggacttaaatgctacatgtg----------

upper sequence: AT1G10950.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 8
GTCTAGTTCTGCTCTCAGCGGTAGTTGGTACAGGTGCACAGTTGGCGTTGCTGGTTCTTCTTGTCATATTAATGGCCATCGTGGGAACTCTCTACGTTGGgtatgt--attacactattcttttctcttgagaccaattttgtgttgttgttttccctacatgcggttggcttgtatattggattttgctcacctcttattctaattatttcag
|| | ||| | || |||||  | |||||||||||||| ||| | || |||||||||||||||||||| ||  |||| || || || |   | || |||||||| ||  || ||  ||  |   |  ||  |       ||||  |  |  ||||    |      ||  |  ||| ||    ||    || |  |  |||              
GTTTGGTTATTCTTTCAGCTATTGTTGGTACAGGTGCTCAGCTTGCATTGCTGGTTCTTCTTGTCATCTTGTTGGCTATTGTTGGGATGTTGTATGTTGGgtaagtccataaccttaaacgactgactgtaatattgctttgaataatgattttgttaatg-atagtgtgactgtctacaaaatga-acttaaatgctatat------------

upper sequence: AT1G10950.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA08G13370.1 (Glycine max), 5'ss of exon 8
GTCTAGTTCTGCTCTCAGCGGTAGTTGGTACAGGTGCACAGTTGGCGTTGCTGGTTCTTCTTGTCATATTAATGGCCATCGTGGGAACTCTCTACGTTGGgtatgtattacactattcttttctcttgagaccaattttgtgttgttgttttccctacatgcggttggcttgtatattggattttgctcacctcttattctaattatttcag
   ||||| | || ||||| || ||||| |||||||| ||| | ||||||||||||||||||||| | ||  |||| || || || |   | || |||||||||||     ||  |||   |  ||  |    || | ||  |  | |  |||  |  ||    |    |||| || |  || || ||    |  ||  |   |        
ACTTAGTTATTCTTTCAGCTGTTGTTGGCACAGGTGCTCAGCTTGCGTTGCTGGTTCTTCTTGTCGTCTTGTTGGCTATTGTTGGGATGTTGTATGTTGGgtatgtgcgtaacc-ttcaactgactgaaacataagtctgaataat-gaattcattggat----tctagttgtgtacta-atgttactttagtaataagcatgtagc-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164066189|gb|ES148871.1|ES148871
EST:     TGGGAACTCTCTACGTTGG                         GAGAGGAGCAATCGTCACAACTTTCATAGTGTGCTATGCTCTGACTTCTTT
genomic: TGGGAACTCTCTACGTTGGgtatgtatta ... attatttcagGAGAGGAGCAATCGTCACAACTTTCATAGTGTGCTATGCTCTGACTTCTTT