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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATCGTGCTCCAGAACTCATTTTTGGTGCCAGTGAATACACAACTGCAATTGATATATGGTCCACTGGTTGTGTGATGGCCGAACTGCTTCTTGGACAGgttaaagcatgatttttgcattagctatatgttgttctattcattcagtttattccttgtcttactattttgtgcccttgctaatttgtcgtacag

Basic information

species Arabidopsis thaliana
transcript AT1G09840.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G09840.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os03g62500.1 (Oryza sativa), 5'ss of exon 8
CTATCGTGCTCCAGAACTCATTTTTGGTGCCAGTGAATACACAACTGCAATTGATATATGGTCCACTGGTTGTGTGATGGCCGAACTGCTTCTTGGACAGgttaaagcatgatttttgcattagctatatgttgttctattcattcagtttattccttgtcttactattttgtgcccttgctaatttgtcgtacag
 ||  | || ||||| ||||| |||||||| | |||||| || ||||| |||||| | ||||| || || ||||| ||||| || || || ||||||||||||      | |||  |||||   | |||| ||| |   ||  |||| |||    ||| |  || ||   |    || |||               
TTACAGGGCACCAGAGCTCATATTTGGTGCAACTGAATATACTACTGCCATTGATTTGTGGTCTACAGGCTGTGTCATGGCAGAGCTTCTGCTTGGACAGgtt------tcattcatgcat--acaatattttgct---tttgttcaattt----cttattctaataacattcatccatgcag-------------

upper sequence: AT1G09840.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 7
CTATCGTGCTCCAGAACTCATTTTTGGTGCCAGTGAATACACAACTGCAATTGATATATGGTCCACTGGTTGTGTGATGGCCGAACTGCTTCTTGGACAGgt-taaagcatgatttttgcattagctatatgttgttctattcat--tcagtttattccttgtcttactattttgtgcccttg----ctaatttgtcgtacag
||| |||||||| ||||| || ||||| |||| |||||| |||||||| || ||||||||||| ||||||||||| ||||| ||| | |||||||||||||| |   |    |       ||  |  | || ||  ||  |||||  |   ||| ||   |||||| || |||  |   | ||      || |||   | |||
CTACCGTGCTCCGGAACTTATATTTGGGGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggtgcaagaaaaaaatgtgacaaatttttctcatttcatcatttctttgttttctgtctt-ctttttcattttcctgaagttgaagttgatttgcag

upper sequence: AT1G09840.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA12G28730.2 (Glycine max), 5'ss of exon 8
CTATCGTGCTCCAGAACTCATTTTTGGTGCCAGTGAATACACAACTGCAATTGATATATGGTCCACTGGTTGTGTGATGGCCGAACTGCTTCTTGGACAGgt-taaagcatgatttttgcattagctatatgttgttctattcat--tcagtttattccttgtcttactattttgtgcccttg----ctaatttgtcgtacag
||| |||||||| ||||| || ||||| ||||  ||||| |||||||| || ||||||||||| ||||||||||| ||||| ||| | |||||||||||||| |   |     |      ||  |  | || ||  ||  |||||  |   | | ||   |||||| || ||   |   | ||      || |||   | |||
CTACCGTGCTCCGGAACTTATATTTGGGGCCACCGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggttctttaaaaaaatgtgacaaatttttctcatttcatcatttctctgttttctgtctt-cttttgcattttcctgaagttcaagttgatttgcag

upper sequence: AT1G09840.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 7
CTATCGTGCTCCAGAACTCATTTTTGGTGCCAGTGAATACACAACTGCAATTGATATATGGTCCACTGGTTGTGTGATGGCCGAACTGCTTCTTGGACAGgttaaagcatgatttttgcattagctatatgttgttctattcattcagtttattccttgtcttactattttgtgcccttgctaat----ttgtcgtacag
 || ||||| ||||||||||| |||||||||| |||||| || ||||| || ||||| ||||| ||||| ||||||||||| ||| ||||||| ||||||||   |   || |  || ||   |   |    |   ||   | ||   |   ||||  ||| |  ||||| |     |  ||||     || | ||||||
TTACCGTGCCCCAGAACTCATATTTGGTGCCACTGAATATACGACTGCTATAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacactgttaatttcagatgtagttgacttgccttcgcttttcatcatttccaagtcctgttatttaggcttttatctaaccatcttctggtacag

upper sequence: AT1G09840.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 7
CTATCGTGCTCCAGAACTCATTTTTGGTGCCAGTGAATACACAACTGCAATTGATATATGGTCCACTGGTTGTGTGATGGCCGAACTGCTTCTTGGACAGgttaaagcatgatttttgcattagctatatgttgttctattcattcagtttattccttgtcttactattttgtgcccttgctaatttgtcgtacag---------------------------------------------------------------------------------------------
 || |||||||| || || || ||||| || |  |||||||||||||| ||||| |||||||| |  ||||| |||||||| ||||| || || ||||||||       |  ||  ||   ||| |   ||   |  |    ||||  ||  | |   ||  || |  || |       | ||  |  | ||   |                                                                                             
TTACCGTGCTCCCGAGCTGATATTTGGAGCTACAGAATACACAACTGCGATTGACATATGGTCGATGGGTTGCGTGATGGCGGAACTTCTCCTAGGACAGgtacttatgtagttcctgg--tagatg-gtgaattcatggagattctattactcctgagtacta-tggttcggaatggagatagatcattgtgttgattgtaatgagatgtaagtggttggtgaagtgatcattgttggtttagttagatgatatgaattctgtctggacaatttcgatgttggtgcag

upper sequence: AT1G09840.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: EFJ10962 (Selaginella moellendorffii), 5'ss of exon 7
CTATCGTGCTCCAGAACTCATTTTTGGTGCCAGTGAATACACAACTGCAATTGATATATGGTCCACTGGTTGTGTGATGGCCGAACTGCTTCTTGGACAGgttaaagcatgatttttgcattagctatatgttgttctattcattcagtttattccttgtcttactattttgtgcccttgctaatttgtcgtacag
||| || || || || || ||||| |||||||  ||||||||||| ||||||||||| ||||| |  || |||||| |||| |||||||| ||||| |||||       || |||     || |   |||        || | | |   || |   | ||  |||                               
CTACCGAGCGCCCGAGCTGATTTTCGGTGCCACGGAATACACAACAGCAATTGATATCTGGTCGATGGGATGTGTGTTGGCTGAACTGCTACTTGGTCAGgt------gtgctttgcttgtttgaggtattagaagacatccttaccacttgtgaat-gttctacag-----------------------------