1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGAGAGATATTCAACATCTCGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattcttttctattggctttattgttgtctcatcaatccaaatcgtttcaagtacatcctggtgtggtccgtttgtaatagatatcatactctgagctttttggatcattgcttgagtaaacttattcatgttttcaactctctctcag
species | Arabidopsis thaliana |
transcript | AT1G09340.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAG GCCGGTGGGTTTCCGGAGCCAGAGEST: gi|124886801|gb|EH965703.1|EH965703
genomic: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAGCCAGAG
EST: AGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAG GCCGGTGGGTTTCCGGAGCCAGAAAGATTGTTCATTACAACCCGAAAGAGTEST: gi|124799009|gb|EH888688.1|EH888688
genomic: AGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAGCCAGA--GATTGTTCATTACAACCCGAAAGAGT
EST: AATATGTTACCTTTGATGGGTTAGCAAAAGCTTTGCGCAAAG GCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTCEST: gi|124897912|gb|EH974126.1|EH974126
genomic: AATATGTTACCTTTGATGGGTTAGCAAAAGC-TTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTC
EST: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAG GCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAEST: gi|125208659|gb|EL223613.1|EL223613
genomic: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAA
EST: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAG GCCGGTGGGTTTCCGGAGCCAGEST: gi|86080119|gb|DR375876.1|DR375876
genomic: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAGCCAG
EST: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAA-STTGCGCAAAG GCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTCEST: gi|116482238|gb|EG524830.1|EG524830
genomic: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTC
EST: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAG GCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTCEST: gi|124757668|gb|EH847798.1|EH847798
genomic: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTC
EST: C-GGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAG GCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAGCCCGAAAGAGTTCEST: gi|124868998|gb|EH953435.1|EH953435
genomic: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTC
EST: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAG GCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGEST: gi|125225178|gb|EL239263.1|EL239263
genomic: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCG
EST: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAG GCCGGTGGGTTTCCEST: gi|124893349|gb|EH972251.1|EH972251
genomic: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCC
EST: CTTGCGCAAAG GCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTCEST: gi|125168639|gb|EL193184.1|EL193184
genomic: CTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTC
EST: CTTGCGCAAAG GCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTCEST: gi|125090155|gb|EL148256.1|EL148256
genomic: CTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTC
EST: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAG GCCGGTGGGTTTCCGGAGCCAGAGATTGTTACATTACAACCCGAAAGAGTTEST: gi|125227563|gb|EL241648.1|EL241648
genomic: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAGCCAGAGATTGTT-CATTACAACCCGAAAGAGTT
EST: C-GGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAG GCCGGTGGGTTTCCGGAGEST: gi|125230806|gb|EL244891.1|EL244891
genomic: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAG
EST: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAG GCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTCEST: gi|124861629|gb|EH946066.1|EH946066
genomic: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTC
EST: GGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAG GCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTCEST: gi|124933045|gb|EL010246.1|EL010246
genomic: GGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTC
EST: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAG GCCGGTGGGTTTCCGGAGCCAGAGATTGTTEST: gi|124886268|gb|EH965170.1|EH965170
genomic: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAGCCAGAGATTGTT
EST: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAG GCCGGTGGGTTTCCGGAGCCAGAGATTGEST: gi|86083439|gb|DR379198.1|DR379198
genomic: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAGCCAGAGATTG
EST: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAG NCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTCEST: gi|125096508|gb|EL153286.1|EL153286
genomic: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTC
EST: C-GGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAG GCCGGTGGGTTTCCGGAGCCAGAGA
genomic: CGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattctt ... tctctctcagGCCGGTGGGTTTCCGGAGCCAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGAGAGATATTCAACATCTCGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGgtacattcttttctattggctttattgttgtctcatcaatccaaatcgtttcaagtacatcctggtgtggtccgtttgtaatagatatcatactctgagctttttggatcattgcttgagtaaacttattcatgttttcaactctctctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG