1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ACTTCAAGGATGACCCAGAGCTCTACGTCTTCCCCAAGCTGAAATATGTTGGACTCGAATTGTGGCAGgtaaataaatctttgtcactttgaatgaccttcgaagatatgctttattcccatgactctcatctaatacatgttactcttccag
species | Arabidopsis thaliana |
transcript | AT1G09210.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTCGAATTGTGGCAG GTGAAATCAGGATCATTGTTCGACAATGTCTTGATCTGCGATGACCCAGACEST: gi|116393133|gb|EG435725.1|EG435725
genomic: CTCGAATTGTGGCAGgtaaataaat ... actcttccagGTGAAATCAGGATCATTGTTCGACAATGTCTTGATCTGCGATGACCCAGAC
EST: AGCTCTACGTCTTCCCCAAGCTGAAATATGTTGGACTCGAATTGTGGCAG GTGAGATCAGGATCATTGTTCGACAATGTCTTGATCTGCGATGACCCAGACEST: gi|164207556|gb|ES093795.1|ES093795
genomic: AGCTCTACGTCTTCCCCAAGCTGAAATATGTTGGACTCGAATTGTGGCAGgtaaataaat ... actcttccagGTGAAATCAGGATCATTGTTCGACAATGTCTTGATCTGCGATGACCCAGAC
EST: AAATATGTTGGACTCGAATTGTGGCAG GTGAAATCAGGATCATTGTTCGACAATGTCTTGATCEST: gi|116412926|gb|EG455518.1|EG455518
genomic: AAATATGTTGGACTCGAATTGTGGCAGgtaaataaat ... actcttccagGTGAAATCAGGATCATTGTTCGACAATGTCTTGATC
EST: AGCTCTACGTCTTCCCCAAGCTGAAATATGTTGGACTCGAATTGTGGCAG GTGAAATCAGGATCATTGTTCGACAATGTCTTGATCTGCGATGACCCAGACEST: gi|163977558|gb|ES028524.1|ES028524
genomic: AGCTCTACGTCTTCCCCAAGCTGAAATATGTTGGACTCGAATTGTGGCAGgtaaataaat ... actcttccagGTGAAATCAGGATCATTGTTCGACAATGTCTTGATCTGCGATGACCCAGAC
EST: GAAATATGTTGGACTCGAATTGTGGCAG GTGAAATCAGGATCATTGTTCGACAATGTCTTGATCEST: gi|86078431|gb|DR374188.1|DR374188
genomic: GAAATATGTTGGACTCGAATTGTGGCAGgtaaataaat ... actcttccagGTGAAATCAGGATCATTGTTCGACAATGTCTTGATC
EST: AGCTCTACGTCTTCCCCAAGCTGAAATATGTTGGACTCGAATTGTGGCAG GTGAAATCAGGATCATTGTTCGACAATGTCTTGATCTGCGATGACCCAGACEST: gi|116412928|gb|EG455520.1|EG455520
genomic: AGCTCTACGTCTTCCCCAAGCTGAAATATGTTGGACTCGAATTGTGGCAGgtaaataaat ... actcttccagGTGAAATCAGGATCATTGTTCGACAATGTCTTGATCTGCGATGACCCAGAC
EST: AGCTCTACGTCTTCCCCAAGCTGAAATATGTTGGACTCGAATTGTGGCAG GTGAAATCAGGATCATTGTTCGACAATGTCTTGATCTGCGATGACCCAGAC
genomic: AGCTCTACGTCTTCCCCAAGCTGAAATATGTTGGACTCGAATTGTGGCAGgtaaataaat ... actcttccagGTGAAATCAGGATCATTGTTCGACAATGTCTTGATCTGCGATGACCCAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTCAAGGATGACCCAGAGCTCTACGTCTTCCCCAAGCTGAAATATGTTGGACTCGAATTGTGGCAGgtaaataaatctttgtcactttgaatgaccttcgaagatatgctttattcccatgactctcatctaatacatgttactcttccag
- - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - AGCTGA