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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTTATTGGgtaacatgttaacctttaacattctaccgggtctcaccatttttgatttttgttactgacaattatactgaaccttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G08860.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv14s0030g00600.t01 (Vitis vinifera), 5'ss of exon 6
GACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTTATTGGgtaacatgttaacctttaacattctaccgggtctcaccatt----tttgatttttgttactgacaattatactgaaccttgcag---------------------------------------------------
|| | |||||| |||||||||||||| ||||| || |  ||||||||||||| ||| || ||||||    | || || |  | ||     |  | | |  ||     ||| | |||| || |      || |||  ||  ||                                                       
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATCGGgtaattaatgaatctatttcttttattagttttttattatcatcctttcagttttttttcctttggtt-taccaaattttatgtcatcatcctttgtttcctgagatatgtcaactttgaaaattcctttatcag

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv14s0030g00570.t01 (Vitis vinifera), 5'ss of exon 9
GACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTTATTGGgtaacatgttaacctttaacattctaccgggtctc----accatttttgatttttgttactgacaattatactgaaccttgcag---------------------------------------------------
|| | |||||| |||||||||||||| ||||| || || |||||||||||||  || || |||||     | || || |  | |  ||   | | |     | |||  ||    ||| |||        | |||  ||  ||                                                       
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTGCTGATCGGgtagttaatgaatctatttc-tcttattagttttttattatcatcctttcagttttttatcctttggtttaccaaattttatgtcatcatcctttgtttcctgagatatgtcaactttgaaaattcctttatcag

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv14s0030g00550.t01 (Vitis vinifera), 5'ss of exon 5
GACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTTATTGGgtaacatgttaacctttaacattctaccgggtctcaccatt----tttgatttttgttactgacaattatactgaaccttgcag---------------------------------------------------
|| | |||||| |||||||||||||| ||||| || || ||||||||||||| ||| || ||||||    | || || |  |  |     |  | | |  ||     ||| | |||| || |      || |||  ||  ||                                                       
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGGgtaattaatgaatctatttctcttattagttttttattatcatcctttcagttttttttcctttggtt-taccaaattttatgtcatcatcctttgtttcctgagatatgtcaactttgaaaattcctttatcag

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 5'ss of exon 8
GACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTTATTGGgtaacatgttaacctttaacattctaccgggtctcaccatt----tttgatttttgttactgacaattatactgaaccttgcag---------------------------------------------------
|| | |||||| |||||||||||||| ||||| || || ||||||||||||| ||| || ||||||    | || || |  | ||     |  | | |  ||     ||| | |||| || |      || |||  ||  ||                                                       
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGGgtaattaatgaatctatttcttttattagttttttattatcatcctttcagttttttttcctttggtt-taccaaattttatgtcatcatcctttgtttcctgagatatgtcaactttgaaaattcctttatcag

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv14s0030g00500.t01 (Vitis vinifera), 5'ss of exon 8
GACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTTATTGGgtaac-atgttaacct----------ttaacattctaccgg-gtctcaccatttttgatttttgttactgacaattatactgaaccttgcag----------------------------------------------------------------------
|| | |||||| |||||||||||||| ||||| || |  ||||||||||||| ||| |||||||||  ||   || ||          |||   || ||      ||     | ||||  ||||| ||  |     || |  || || |||                                                                         
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGGgtaattatacgaatctatttctcttattagttttttattatcatccttttagtttttttttttttttttttttttttttttgtactttggtttaccaaattttatgtcatcgtcctttgtttcttgagatataaatgttaactttgaaaattccttcatcag

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv14s0030g00540.t01 (Vitis vinifera), 5'ss of exon 6
GACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTTATTGGgtaac-atgttaacctttaacattctaccgggtctcaccat-----ttttgatttttgttactgacaatta---tactgaaccttgcag-------------------------------------------------------
|| | |||||| |||||||||||||| ||||| || |  ||||||||||||| ||| |||||||||  ||   || || |  |  ||    |  | | |  ||     ||||  ||||| ||  |  |  ||    |||  ||  ||                                                           
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGGgtaattatacgaatctatttctctcattagttttttattatcatccttttcgtttttttttttttcctttggtttaccaaattttatgtcatcatcctttgtttcttgagatataaatgttaactttgaaaattccttcatcag