1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTGGGATATGAGATACGTTCGACGGTTGTTCATGAGAAAATGCTTCAGATGTGGAAAGACAACTTTGAAGTCAAAACCATACCGAGATCCAAGgtacgttgatggcacagttactgtttaagtttcatgaaatatacaaccgcttattctggaacgcaatctgcag
species | Arabidopsis thaliana |
transcript | AT1G08125.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTCAGATGTGGAAAGACAACTTTGAAGTCAAAACCATACCGAGATCCAAG ATGGATGGTGAATACCAAGACCCGAGCATTCATCTGTACATCATGGCACAGEST: gi|125211508|gb|EL226462.1|EL226462
genomic: TTCAGATGTGGAAAGACAACTTTGAAGTCAAAACCATACCGAGATCCAAGgtacgttgat ... caatctgcagATGGATGGTGAATACCAAGACCCGAGCATTCATCTGTACATCATGGCACAG
EST: TTCAGATGTGGAAAGACAACTTTGAAGTCAAAACCATACCGAGATCCAAG ATGGATGGTGAATACCAAGACCCGEST: gi|116414102|gb|EG456694.1|EG456694
genomic: TTCAGATGTGGAAAGACAACTTTGAAGTCAAAACCATACCGAGATCCAAGgtacgttgat ... caatctgcagATGGATGGTGAATACCAAGACCCG
EST: TTCAGATGTGGAAAGACAACTTTGAAGTCAAAACCATACCGAGATCCAAG ATGGATGGTGAATACCAAGACCCGAGCATTCATCTGTACATCATGGCACAGEST: gi|164233719|gb|ES021681.1|ES021681
genomic: TTCAGATGTGGAAAGACAACTTTGAAGTCAAAACCATACCGAGATCCAAGgtacgttgat ... caatctgcagATGGATGGTGAATACCAAGACCCGAGCATTCATCTGTACATCATGGCACAG
EST: TTCAGATGTGGAAAGACAACTTTGAAGTCAAAACCATACCGAGATCCAAG ATGGATGGTGAATACCAAGACCCGAGCATTCA
genomic: TTCAGATGTGGAAAGACAACTTTGAAGTCAAAACCATACCGAGATCCAAGgtacgttgat ... caatctgcagATGGATGGTGAATACCAAGACCCGAGCATTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGGATATGAGATACGTTCGACGGTTGTTCATGAGAAAATGCTTCAGATGTGGAAAGACAACTTTGAAGTCAAAACCATACCGAGATCCAAGgtacgttgatggcacagttactgtttaagtttcatgaaatatacaaccgcttattctggaacgcaatctgcag
- - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC