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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAAAGGTACCACGAGACTTCTTCAGCTCATCATCGAAGATTCCTCAGGTTGATGGGCCAATGCCTGACCCTTATGATGAAATGCTCTCTACACCAAATgtaagaatgctgcttttcatttagtcaaaagtttcagtagatatatacttcttcgacatgctcacaaatcagtagctagaaacttttctgccttagtaca...

Basic information

species Arabidopsis thaliana
transcript AT1G07480.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G07480.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv06s0004g05210.t01 (Vitis vinifera), 5'ss of exon 7
TAGAAAGGTACCACGAGACTTCTTCAGCTCATCATCGAAGATTCCTCAGGTTGATGGGCCAATGCCTGACCCTTATGATGAAATGCTCTCTACACCAAATgtaagaatgctgcttttcatttagtcaaaagtttcagtagatatatacttcttcgacatgctcacaaatcagtagctagaaacttttctgccttagtaca---
|||| || ||   |   |  |     | || |    || |||||||||  | ||||||||||| ||||| |||||||| ||  |||| |||||||| ||||||| || ||  || ||  ||    || ||   | |  |||  ||   | ||  |   | ||  |   ||  |   |  |   |||||  | ||  |      
TAGAGAGATATTTCCGCAGGTGGCTGGATCCTATGTGAGGATTCCTCAACTGGATGGGCCAATTCCTGATCCTTATGAAGATGTGCTTTCTACACCCAATgtaaaaa-gcctctcttttttc--ccagaaccataatcagacttaatgtgctatgctcttctttcttttcctttcttttatttttttccccttttcttatttt