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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACTCTTGGGGAAACTCTTGTTAGACACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAAAgtaaagcatcttccagtttcctccttcatatcaattttgtattcttgttaagtcatctttgttttatggagcag

Basic information

species Arabidopsis thaliana
transcript AT1G05170.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G05170.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G007185_T01 (Zea mays), 5'ss of exon 8
CAACTCTTGGGGAAACTCTTGTTAGACACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAAAgtaaagcatc---ttccagtttcctccttcatatc---aattttgtattcttgttaagtcatctttgttttatgga-gcag-----
|||| |||||  | |   |    | |||      ||| ||  |||| || ||||| |||||||| |||||||||||||||||| | |||||||| |      ||   |||  || ||  |||     |     |  | |||  | ||  |     |   || |  || |     
CAACACTTGGAAATATCTTATCCAAACATATTTCAAAGCCCAGGGTATACATTGGATGCATGAAGTCTGGCCCTGTCCTCTCTGACAAgtaaagaaaaagagtctcttttgttcattagtatttaggacaacatgcttttgcca-gttgttacaatgagattgctgctgtccag

upper sequence: AT1G05170.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA12G10520.1 (Glycine max), 5'ss of exon 8
CAACTCTTGGGGAAACTCTTGTTAGACACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAAAgtaaagcat-cttccagtttcctccttcatatcaattttgtat----tcttgttaagtcatctttgttttatggagcag----------
|||| || || |||||||| |||||||| ||   |||||||||| | || ||||| |||||||||||||| |||||||| || ||||||| |   || |||    ||   |   |   ||  | ||  ||       |||    ||    | |    |  | |  |           
CAACACTGGGAGAAACTCTAGTTAGACATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAAgtgagaaatgcttatttttgtttttattgaattgaattactaaagcactttgacctgtagcttctaacctgagaaatactttgttgcag

upper sequence: AT1G05170.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA06G46230.2 (Glycine max), 5'ss of exon 8
CAACTCTTGGGGAAACTCTTGTTAGACACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAAAgt---aaagcatcttccagtttcctccttcatatcaattttgtattcttgttaagtcatctttgttttatggagcag-------------
|||| || ||  ||||||| ||||| || ||   |||||||||| | || ||||| |||||||||||||| |||||||| || |||||||   |||     || |  | |  |  || |  | |||| |  |  ||  || | |  |   |  |   | |  |               
CAACACTGGGACAAACTCTAGTTAGGCATCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGGCCTGTCCTATCCCAAAAgtgagaaaatgattttctttgtttttattgaattgaattattaaagctctttgacttgttgcttctaacttgccctactttgttgcacag

upper sequence: AT1G05170.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA13G38500.1 (Glycine max), 5'ss of exon 8
CAACTCTTGGGGAAACTCTTGTTAGACACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAAAgta--aagcatcttccagtttcctc------cttcatatcaattttgtattcttgttaag---tcatctttgttttatggagcag--------------
| || || ||  ||||||| || ||||||||   |||||| || || || ||||| |||||||||||||| ||||| || ||||||||||   ||  || |||   | ||||        |||||   |   |   |    ||| | |   |||  | |   || |      |              
CGACACTGGGACAAACTCTAGTGAGACACCGATCAAAACCGCGTGTGTACATTGGATGCATGAAATCTGGGCCTGTTCTTTCTCAAAAgtgagaataattttcttttatccttgtgctatttcatgaaagggtcaaaaatatgtaatgctttcacttctagcttcttacttggccactttcttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124724228|gb|EH815630.1|EH815630
EST:     CCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAAA                         AGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTTTGGT
genomic: CCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAAAgtaaagcatc ... tatggagcagAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTTTGGT