Sequence
atgc intronic sequence ATGC exonic sequenceGGGGAAAGTTGCTGAAGGTATCGATTTTGATCGTCATTATGGAAGACTGGTTGTAATGTACGGAGTACCATTCCAGTATACATTAAGCAAgtaagttgtactcaaatgaatgtttatcatttcaatttccggttttctgcttttatatttcatcgtacttgggagatgataagatggaaacgggaaaaatttcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G03190.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G03190.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G097605_T02 (Zea mays), 5'ss of exon 2
GGGGAAAGTTGCTGAAGGTATCGATTTTGATCGTCATTATGGAAGACTGGTTGTAATGTACGGAGTACCATTCCAGTATACATTAAGCAAgtaagttgtactca-aatgaatgtttatcatttcaatttccggttttctgc------tttta--tatttcatcgtacttgggagatgataagatg-gaaacgggaaaaatttcag------------------------------------
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GGGCAAAGTTGCTGAAGGTATTGATTTTGATCGGCACTATGGCAGATTAGTTATCATGTTTGGTGTTCCTTTCCAGTACACATTGAGTCGgtgagttttgttcacattgagcttcaaccctctctaccccttgattttggtgccaagttataggtagtttgatgcatgtacgcagttgtaatttgtggtggcttaatgatttcataacagttgcctttgtttgtctctatacgatttgtag
upper sequence: AT1G03190.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA16G28290.1 (Glycine max), 5'ss of exon 8
GGGGAAAGTTGCTGAAGGTATCGATTTTGATCGTCATTATGGAAGACTGGTTGTAATGTACGGAGTACCATTCCAGTATACATTAAGCAAgtaagttgtactcaaatgaatgttt--atcatttcaattt----ccggttttctgcttttatatttcatcgtacttggg----agatgataagatggaaacggga---aaaatttcag
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GGGAAAGGTTGCTGAAGGTATAGATTTTGATCGACATTATGGCCGACTAGTAATCATGTTTGGTGTTCCTTTTCAATACACATTAAGCAAgtgagtttcatttgactaaatttctgaacaagtataatttagaactattatatttcttgtcaaaattatggaggttgaattgcagattgtagaacttattagagtaataaattttcag
upper sequence: AT1G03190.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA02G09080.1 (Glycine max), 5'ss of exon 8
GGGGAAAGTTGCTGAAGGTATCGATTTTGATCGTCATTATGGAAGACTGGTTGTAATGTACGGAGTACCATTCCAGTATACATTAAGCAAgtaagttgtactcaaatgaatgttt--atcatttcaattt----ccggttttctgcttttatatttcatcgtacttggg----agatgataagatggaaacggga---aaaatttcag
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GGGAAAGGTTGCTGAAGGTATAGATTTTGATCGACATTATGGCCGACTAGTAATCATGTTTGGTGTTCCTTTTCAATACACATTAAGCAAgtgagtttcatttgactaaatttttgaataaggataatttagaactattatatttcttgtcaaaattatggaggttgaattgcggattgcagaacttaatagagtaataaattttcag
upper sequence: AT1G03190.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv07s0104g00060.t01 (Vitis vinifera), 5'ss of exon 8
GGGGAAAGTTGCTGAAGGTATCGATTTTGATCGTCATTATGGAAGACTGGTTGTAATGTACGGAGTACCATTCCAGTATACATTAAGCAAgtaagttgtactcaaatgaatgtttatcatttcaatttccggtt----ttctgctttta-tatttcatcgtacttgggagatgataagatggaaacgggaaaaatttcag--------------------------------------------------------------------
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GGGGAAAGTAGCTGAAGGTATTGATTTTGATCGACATTATGGAAGATTAGTGATCATGTTTGGTGTTCCTTTCCAATACACATTAAGCAGgtgaattcactatcaatatttctttat--ttctattttgtgaatgaaattatgttattaatgtcttgctgt-tttgcttattgtcatcattgtgactgatatgttttcctttttaattcaagtttcataagttactatttctgcctggtcatgattagacataaatttcgttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125297852|gb|EL311937.1|EL311937EST: GGAAGACTGGTTGTAATGTACGGAGTACCATTCCAGTATACATTAAGCAA GATATTACGAGCAAGATTGGAGTATTTGCACGATACATTTCAAATAAA
genomic: GGAAGACTGGTTGTAATGTACGGAGTACCATTCCAGTATACATTAAGCAAgtaagttgta ... aaaatttcagGATATTACGAGCAAGATTGGAGTATTTGCACGATACATTTCAAATAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGGAAAGTTGCTGAAGGTATCGATTTTGATCGTCATTATGGAAGACTGGTTGTAATGTACGGAGTACCATTCCAGTATACATTAAGCAAgtaagttgtactcaaatgaatgtttatcatttcaatttccggttttctgcttttatatttcatcgtacttgggagatgataagatggaaacgggaaaaatttcag
- - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA