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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACACAGTTCAACTACCTCTCCTGCATAAAGATTTATTTTCGTCCGGATTGCGTAAACGTTCTGGTGTACTTCTCTATGGCCCTCCAGGAACAGGGAAAgtaagtaagccattttttctttcacttttagcatctcttaatagtctgttttttggcagttatatttttgagtttttgaattaaatttacag

Basic information

species Arabidopsis thaliana
transcript AT1G03000.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03000.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA19G39580.1 (Glycine max), 5'ss of exon 9
GGACACAGTTCAACTACCTCTCCTGCATAAAGATTTATTTTCGTCCGGATTGCGTAAACGTTCTGGTGTACTTCTCTATGGCCCTCCAGGAACAGGGAAAgtaagtaa-----------------gccattttttctttcacttttagcatctcttaatagtctgttttttggcagttatatttttgagtttttgaattaaatttacag
              |||||||||||||||||||| ||||||| || ||||| ||||| || |||||||| ||| | ||||| || || ||||| || |||||||||                    | || || |   ||| || |   |  | ||| |        | ||   |     |||||   | | ||  ||| |||  ||||
-------------TTACCTCTCCTGCATAAAGATCTATTTTCATCTGGATTACGTAAGCGATCTGGTGTTCTTTTGTATGGTCCCCCTGGAACTGGCAAAgtaagttgtaatgtaactgtaaatgacaatgttctacctcatttgtctaacgttttacttaaaaaaatatttctaacaccattttcttgctcttttatttaata-acag

upper sequence: AT1G03000.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA03G36930.1 (Glycine max), 5'ss of exon 14
GGACACAGTTCAACTACCTCTCCTGCATAAAGATTTATTTTCGTCCGGATTGCGTAAACGTTCTGGTGTACTTCTCTATGGCCCTCCAGGAACAGGGAAAgt-aagtaagccattttttctttc-----acttttagcatc-tcttaatagtctgttttttggcagttatatttttgagtttttgaattaaatttacag----------------------
              |||||||||||||||||||| ||||||| || ||||| |||||  | |||||||| ||| | ||            ||      |  | |  |  |  | ||||   ||      | ||  | || | | ||   | ||| || |||   |   | ||| || ||      |  |     ||||                       
-------------TTACCTCTCCTGCATAAAGATCTATTTTCATCTGGATTACGTAAgtgatctggtgttcttttgtacctgtaaatgacaatgctctacctcatttctgttacttttatcttaaaaagatttaaaacaccattttctcactcttttatttaatacagacattatt-agcaaaaaagctgttgctacatagtgttccttaaattttcttag

upper sequence: AT1G03000.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv07s0104g01610.t01 (Vitis vinifera), 5'ss of exon 9
GGACACAGTTCAACTACCTCTCCTGCATAAAGATTTATTTTCGTCCGGATTGCGTAAACGTTCTGGTGTACTTCTCTATGGCCCTCCAGGAACAGGGAAAgtaagtaagccattttttctttcacttttagc-atctcttaatagtctgttttttggcagttatatttttgagtttttgaattaaatttacag-------------------------------
             ||||||||||| || || ||||| ||||| ||||| |||||||| || |||||||| ||||| ||||| || || ||||||||||||||||||       ||| |    ||||| | |  || ||| ||||   | ||| |||    |||| ||||| |      |||     || |  |                               
-------------CTACCTCTCCTTCACAAGGATTTGTTTTCATCCGGGTTGCGTAAGCGCTCTGGTGTTCTTCTTTATGGTCCACCTGGAACAGGGAAAgtaagt--ttttgtttgttagccacttatggtgatatctcaatacgttatttcttgt---ttatttttttaa--ccaggaacctggttcattgctttcttggttactcctattgcaaatctcag