1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAAAAAGATACAGTCTACCAAACTCAAGGATAATGATCCATCAGCCGCTTGGTGGAGCTCAAGGTGGCCAAACCGACATTGACATTCAGgtcattcatcctcgcctttatatttcggtttttaatcccagtcatcttcttaagttcttggagcgactagattgatttgaatatcagatgattttgaaacctaaccacacaagttcatggtctgaaaccag
species | Arabidopsis thaliana |
transcript | AT1G02560.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCAAACCGACATTGACATTCAG GCAAATGAAATGCTGCATCACAAGGCAAACCTAAACGGTTACCTCGCATACEST: gi|86083420|gb|DR379179.1|DR379179
genomic: CCAAACCGACATTGACATTCAGgtcattcatc ... ctgaaaccagGCAAATGAAATGCTGCATCACAAGGCAAACCTAAACGGTTACCTCGCATAC
EST: ATCAGCCGCTTGGTGGAGCTCAAGGTGGCCAAACCGACATTGACATTCAG GCAAATGAAATGCTGCATCACAAGGCAAACCTAAACGGTTACCTCGCATACEST: gi|124932010|gb|EL009313.1|EL009313
genomic: ATCAGCCGCTTGGTGGAGCTCAAGGTGGCCAAACCGACATTGACATTCAGgtcattcatc ... ctgaaaccagGCAAATGAAATGCTGCATCACAAGGCAAACCTAAACGGTTACCTCGCATAC
EST: CCAAACCGACATTGACATTCAG GCAAATGAAATGCTTGCATCACAAGGCAAACCTAAACGGTTACCTCGCATAEST: gi|125245366|gb|EL259451.1|EL259451
genomic: CCAAACCGACATTGACATTCAGgtcattcatc ... ctgaaaccagGCAAATGAAATGC-TGCATCACAAGGCAAACCTAAACGGTTACCTCGCATA
EST: ATCAGCCGCTTGGTGGAGCTCAAGGTGGCCAAACCGACATTGACATTCAG GCAAATGAAATGCTGCATCACAAGEST: gi|124962334|gb|EL036764.1|EL036764
genomic: ATCAGCCGCTTGGTGGAGCTCAAGGTGGCCAAACCGACATTGACATTCAGgtcattcatc ... ctgaaaccagGCAAATGAAATGCTGCATCACAAG
EST: ATCAGCCGCTTGGTGGAGCTCAAGGTGGCCAAACCGACATTGACATTCAG GCAAATGAAATGEST: gi|116483047|gb|EG525639.1|EG525639
genomic: ATCAGCCGCTTGGTGGAGCTCAAGGTGGCCAAACCGACATTGACATTCAGgtcattcatc ... ctgaaaccagGCAAATGAAATG
EST: GAGCTCAAGGTGGCCAAACCGACATTGACATTCAG GCAAATGAAATGCTGCATCACAAGGCAAACCTAAACGGTTACCTCGCATACEST: gi|124845973|gb|EH930410.1|EH930410
genomic: GAGCTCAAGGTGGCCAAACCGACATTGACATTCAGgtcattcatc ... ctgaaaccagGCAAATGAAATGCTGCATCACAAGGCAAACCTAAACGGTTACCTCGCATAC
EST: ATCAGCCGCTTGGTGGAGCTCAAGGTGGCCAAACCGACATTGACATTCAG GCAAATGAAATGC
genomic: ATCAGCCGCTTGGTGGAGCTCAAGGTGGCCAAACCGACATTGACATTCAGgtcattcatc ... ctgaaaccagGCAAATGAAATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAAAGATACAGTCTACCAAACTCAAGGATAATGATCCATCAGCCGCTTGGTGGAGCTCAAGGTGGCCAAACCGACATTGACATTCAGgtcattcatcctcgcctttatatttcggtttttaatcccagtcatcttcttaagttcttggagcgactagattgatttgaatatcagatgattttgaaacctaaccacacaagttcatggtctgaaaccag
- - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA